Browse Element(s) Details


OsAffx.16346.1.S1_at

Description tigr:9635.m02012
TID=OsAffx.16346.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2042011/11phosphoglycerate/bisphosphoglycerate mutase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20370OsAffx.31892.3.S1_at2/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20370OsAffx.7216.1.S1_at1/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20370OsAffx.31892.1.S1_x_at1/117+11759991..11765699retrotransposon protein, putative, unclassified
LOC_Os07g20380OsAffx.1194.1.S1_at1/117+11766637..11767122retrotransposon protein, putative, unclassified
LOC_Os07g20390OsAffx.16343.1.S1_at11/117+11769016..11770310hypothetical protein
LOC_Os07g20400OsAffx.16344.1.S1_at11/117+11772901..11773658hypothetical protein
LOC_Os07g20400OsAffx.23458.1.S1_x_at1/117+11772901..11773658hypothetical protein
LOC_Os07g20410OsAffx.16345.1.S1_s_at11/117+11783630..11784537expressed protein
LOC_Os07g20420OsAffx.16346.1.S1_at11/117+11787513..11790709phosphoglycerate/bisphosphoglycerate mutase family protein, putative
LOC_Os07g20430Os.14919.1.S1_at6/117+11792761..11801936retrotransposon protein, putative, unclassified
LOC_Os07g20430Os.56216.1.S1_at1/117+11792761..11801936retrotransposon protein, putative, unclassified
LOC_Os07g20440NANA7+11803000..11806627retrotransposon protein, putative, unclassified
LOC_Os07g20450OsAffx.940.1.S1_x_at1/117+11808363..11809918retrotransposon protein, putative, unclassified
LOC_Os07g20460Os.45173.1.S1_x_at3/117+11811099..11818950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20460Os.47999.2.A1_x_at1/117+11811099..11818950retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16346.1.S1_at--679--7511Chr07:11788000..11788024 (25 bp)
GTGGATACTATGTTCTGTTGTCTAA
LOC_Os07g20420
OsAffx.16346.1.S1_at--101--5451Chr07:11787941..11787965 (25 bp)
GAACGGATAAGGCTTCTGGTCAAAA
LOC_Os07g20420
OsAffx.16346.1.S1_at--111--1691Chr07:11787901..11787925 (25 bp)
AGCCTCCTGGGTATAGCTCTTTTGA
LOC_Os07g20420
OsAffx.16346.1.S1_at--265--10131Chr07:11787851..11787875 (25 bp)
TATGTTGGCGACAAGAGTCACCCAC
LOC_Os07g20420
OsAffx.16346.1.S1_at--843--6091Chr07:11787837..11787861 (25 bp)
GAGTCACCCACAGCACATTGAAATC
LOC_Os07g20420
OsAffx.16346.1.S1_at--404--5011Chr07:11787773..11787797 (25 bp)
GCAGGCTATGTACCAAACACGGGTT
LOC_Os07g20420
OsAffx.16346.1.S1_at--461--2171Chr07:11787757..11787781 (25 bp)
ACACGGGTTCTGTTCTTCATGATTT
LOC_Os07g20420
OsAffx.16346.1.S1_at--477--5571Chr07:11787720..11787744 (25 bp)
GAAAGAGTCTGCATTGCGAATCCAT
LOC_Os07g20420
OsAffx.16346.1.S1_at--220--4751Chr07:11787683..11787707 (25 bp)
GCTGTTGCTTTTGCTCTAATGAATT
LOC_Os07g20420
OsAffx.16346.1.S1_at--479--3811Chr07:11787623..11787647 (25 bp)
CTCCGGGTCTGTAGTGATTGCCATA
LOC_Os07g20420
OsAffx.16346.1.S1_at--49--3571Chr07:11787555..11787579 (25 bp)
CATCAGAGATTTACAGCGCTTCCAT
LOC_Os07g20420
Target Sequence 
GTGGATACTATGTTCTGTTGTCTAATATATATGCAGAGGCTAGAATGTGGAAAGATGTGGAACGGATAAGGCTTCTGGTC
AAAACAAGAAGAATAGAAAAGCCTCCTGGGTATAGCTCTTTTGAGTTGAAAGGTAAAATCTATTTGTTTTATGTTGGCGA
CAAGAGTCACCCACAGCACATTGAAATCTATTCTTATTTGGAGAAACTGCTTGAAAGAATGCAAGAAGCAGGCTATGTAC
CAAACACGGGTTCTGTTCTTCATGATTTGGATGAAGAAGAGAAAGAGTCTGCATTGCGAATCCATAGTGAAAAGCTTGCT
GTTGCTTTTGCTCTAATGAATTCAGTCCCAAGATCAGTGATCCATATAATAAAGAATCTCCGGGTCTGTAGTGATTGCCA
TACAGCAATGAAGTTCATTACCAAGATCACTGAAAGAGAAATCATCATCAGAGATTTACAGCGCTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis