Browse Element(s) Details


OsAffx.16438.1.S1_at

Description tigr:9635.m02635
TID=OsAffx.16438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g184101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g117941/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g290001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g297301/11retrotransposon protein, putative, unclassified
LOC_Os09g221001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18350NANA7+10870294..10873223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18360OsAffx.22699.1.S1_x_at1/117+10876807..10881674retrotransposon protein, putative, unclassified
LOC_Os07g18370NANA7+10882831..10886012hypothetical protein
LOC_Os07g18380NANA7+10888503..10889965hypothetical protein
LOC_Os07g18390OsAffx.8916.1.S1_at3/117+10891756..10893985retrotransposon protein, putative, unclassified
LOC_Os07g18390OsAffx.9790.1.S1_x_at2/117+10891756..10893985retrotransposon protein, putative, unclassified
LOC_Os07g18390OsAffx.10020.1.S1_x_at2/117+10891756..10893985retrotransposon protein, putative, unclassified
LOC_Os07g18390OsAffx.19035.2.S1_at1/117+10891756..10893985retrotransposon protein, putative, unclassified
LOC_Os07g18390OsAffx.8916.1.S1_x_at1/117+10891756..10893985retrotransposon protein, putative, unclassified
LOC_Os07g18390OsAffx.8338.1.S1_x_at1/117+10891756..10893985retrotransposon protein, putative, unclassified
LOC_Os07g18390OsAffx.1197.1.S1_x_at1/117+10891756..10893985retrotransposon protein, putative, unclassified
LOC_Os07g18400NANA7+10894941..10896326retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18410OsAffx.7216.1.S1_at2/117+10897079..10899175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18410OsAffx.16438.1.S1_at1/117+10897079..10899175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18410OsAffx.20387.1.S1_x_at1/117+10897079..10899175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18420OsAffx.29419.3.S1_at1/117+10899836..10901866retrotransposon protein, putative, unclassified
LOC_Os07g18420OsAffx.21161.1.S1_at1/117+10899836..10901866retrotransposon protein, putative, unclassified
LOC_Os07g18430NANA7+10904698..10905633retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18440OsAffx.7657.1.S1_x_at1/117+10906043..10907438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18440OsAffx.7657.1.S1_at1/117+10906043..10907438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18450OsAffx.22759.1.S1_at1/117+10910940..10914497retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18450OsAffx.26987.1.S1_at1/117+10910940..10914497retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18460OsAffx.28509.1.S1_at11/117+10920767..10923262hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16438.1.S1_at--712--174Chr12:12644033..12644052 (20 bp)
ACCTATCGGAAGATCGGGACCCTAG
NONE
OsAffx.16438.1.S1_at--971--8072Chr08:23535601..23535620 (20 bp)
GGACCCTAGTCCTCATCAGTAATGG
NONE
OsAffx.16438.1.S1_at--613--7631Chr07:15863238..15863262 (25 bp)
GGGACTAGGACACCATGCGACTACA
NONE
OsAffx.16438.1.S1_at--767--9151Chr07:15863253..15863277 (25 bp)
TGCGACTACACGAACATACTCCTAT
NONE
OsAffx.16438.1.S1_at--306--3571Chr07:15863267..15863291 (25 bp)
CATACTCCTATTTGTGGCGACAACC
NONE
OsAffx.16438.1.S1_at--399--8391Chr07:15863282..15863306 (25 bp)
GGCGACAACCATAATATCCCTAGGG
NONE
OsAffx.16438.1.S1_at--1050--5251Chr07:15863310..15863334 (25 bp)
GAATCCATAGCTCGTTTCTGGGACT
NONE
OsAffx.16438.1.S1_at--107--8651Chr07:15863328..15863352 (25 bp)
TGGGACTCCGCATGGCTACCAAGAA
NONE
OsAffx.16438.1.S1_at--497--10031Chr07:15864863..15864887 (25 bp)
TAGAACATTATATTGGCTGCCCACA
NONE
OsAffx.16438.1.S1_at--557--2131Chr07:15865725..15865749 (25 bp)
ACAGTGAACTGCTGGCCGATGTTGG
NONE
OsAffx.16438.1.S1_at--163--7451Chr07:15865826..15865850 (25 bp)
GTGTCCAGGGCTGATCCAGGCGATA
NONE
Target Sequence 
ACCTATCGGAAGATCGGGACCCTAGTCCTCATCAGTAATGGAATGCCCCCGAAAAGACTTGGATGGGGGACTAGGACACC
ATGCGACTACACGAACATACTCCTATTTGTGGCGACAACCATAATATCCCTAGGGAACGAATCCATAGCTCGTTTCTGGG
ACTCCGCATGGCTACCAAGAAGAAGGCCGAAAGACTTGGCACCACAGGTGATCGAGCTAGAACATTATATTGGCTGCCCA
CACAACCACAAGTGTATGGCCAAATTAAAAGTGGTGGAGTTGGTGGCGAACAGTGAACTGCTGGCCGATGTTGGGCATGG
TAGGAGTAGGCGATACCGGCGGCCAGCGGCAGGCACGGCAAGGGCACTAGGGCAGGCCGCACTGCCGCACGTGTCCAGGG
CTGATCCAGGCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis