Browse Element(s) Details


OsAffx.16439.1.S1_at

Description tigr:9635.m02646
TID=OsAffx.16439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=resistance protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2737011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27340Os.54017.1.S1_at4/117+15905192..15907105No apical meristem protein
LOC_Os07g27350Os.53672.1.A1_at11/117+15911178..15916205expressed protein
LOC_Os07g27360Os.16137.1.S1_s_at11/117+15918307..15921175expressed protein
LOC_Os07g27360Os.52926.1.S1_at1/117+15918307..15921175expressed protein
LOC_Os07g27370OsAffx.16439.1.S1_at11/117+15926951..15929796NB-ARC domain containing protein, expressed
LOC_Os07g27380OsAffx.16440.1.S1_at10/117+15933164..15933842hypothetical protein
LOC_Os07g27390Os.32835.1.S1_x_at11/117+15936423..15939365expressed protein
LOC_Os07g27390Os.32823.1.S1_x_at2/117+15936423..15939365expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16439.1.S1_at--407--8191Chr07:15927488..15927512 (25 bp)
GGAAGACGATTTCTCACTACATTTG
LOC_Os07g27370
OsAffx.16439.1.S1_at--412--3631Chr07:15927457..15927481 (25 bp)
CTTGCTCCTTGTAGACTCCGGAAAT
LOC_Os07g27370
OsAffx.16439.1.S1_at--109--10191Chr07:15927432..15927456 (25 bp)
TATACATTGGTCGATGGCATCCCAT
LOC_Os07g27370
OsAffx.16439.1.S1_at--1001--8271Chr07:15927417..15927441 (25 bp)
GGCATCCCATTTCCAGGATACCAAA
LOC_Os07g27370
OsAffx.16439.1.S1_at--829--3031Chr07:15927384..15927408 (25 bp)
AATCCCTTGCAAACCTTCAGTACTT
LOC_Os07g27370
OsAffx.16439.1.S1_at--598--10171Chr07:15927282..15927306 (25 bp)
TATTCTCCGATGAGGCCCCTAAAGA
LOC_Os07g27370
OsAffx.16439.1.S1_at--401--5971Chr07:15927259..15927283 (25 bp)
GAGAAGCTCACCATCAGTAGCCAAG
LOC_Os07g27370
OsAffx.16439.1.S1_at--344--9531Chr07:15927169..15927193 (25 bp)
TCTATGGCAAAGCTCGAGTACCTTC
LOC_Os07g27370
OsAffx.16439.1.S1_at--246--6091Chr07:15927154..15927178 (25 bp)
GAGTACCTTCATATCCTGATCAGTG
LOC_Os07g27370
OsAffx.16439.1.S1_at--1082--2551Chr07:15927046..15927070 (25 bp)
AACTGTTATGGCTTGACCGCTGAGG
LOC_Os07g27370
OsAffx.16439.1.S1_at--412--6531Chr07:15926993..15927017 (25 bp)
GATTTCTGTTGACACGATCCCTAAT
LOC_Os07g27370
Target Sequence 
GGAAGACGATTTCTCACTACATTTGTGGACCCTTGCTCCTTGTAGACTCCGGAAATTATACATTGGTCGATGGCATCCCA
TTTCCAGGATACCAAACTGGACTGAATCCCTTGCAAACCTTCAGTACTTGCATATATATGTCAAAAGAATTAACCAAGAA
GATCTGAGGATGCTTGGAAGCATACCTTCTCTCCTCACTCTATACCTATTCTCCGATGAGGCCCCTAAAGAGAAGCTCAC
CATCAGTAGCCAAGGATTCCAATCTCTAACATTCTTTAAGATTCACTGCTATCATATGGGATTGGTTTTTGAGGCAGGAT
CTATGGCAAAGCTCGAGTACCTTCATATCCTGATCAGTGCATTTCAAGTGAAGTCTTGGGATGGCAGCTTTGATTTTGGG
ATTCAGCATCTCTACTGCCTCACCAAGGTGTATGCCTATATTAACTGTTATGGCTTGACCGCTGAGGAGGCTGAAGCTGC
AGTGAATGCCATTATGATTTCTGTTGACACGATCCCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis