Browse Element(s) Details


OsAffx.16446.1.S1_at

Description tigr:9635.m02714
TID=OsAffx.16446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2798011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27950Os.11054.1.S1_at10/117+16301327..16305865Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g27960OsAffx.28635.1.S1_at11/117+16307259..16307887expressed protein
LOC_Os07g27970OsAffx.28637.1.S1_x_at11/117+16313393..16317142O-methyltransferase family protein, expressed
LOC_Os07g27980OsAffx.16446.1.S1_at11/117+16323164..16325862hypothetical protein
LOC_Os07g27980OsAffx.24637.2.S1_x_at1/117+16323164..16325862hypothetical protein
LOC_Os07g28000OsAffx.20497.1.S1_at2/117+16331281..16334644transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28010NANA7+16335345..16335687hypothetical protein
LOC_Os07g28020OsAffx.19421.2.S1_at2/117+16337370..16339695transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28030OsAffx.18924.4.S1_at6/117+16341916..16344165transposon protein, putative, unclassified
LOC_Os07g28030OsAffx.18924.2.S1_x_at5/117+16341916..16344165transposon protein, putative, unclassified
LOC_Os07g28030OsAffx.22896.1.S1_x_at1/117+16341916..16344165transposon protein, putative, unclassified
LOC_Os07g28040OsAffx.28637.1.S1_x_at11/117+16345121..16347785O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16446.1.S1_at--323--10491Chr07:16325251..16325275 (25 bp)
TTACAATGAAATCGATACACCTCCC
LOC_Os07g27980
OsAffx.16446.1.S1_at--302--5351Chr07:16325069..16325093 (25 bp)
GAAGATTGCTGCGACAACGCCATCT
LOC_Os07g27980
OsAffx.16446.1.S1_at--1032--5611Chr07:16325057..16325081 (25 bp)
GACAACGCCATCTGCAACAGGTCTC
LOC_Os07g27980
OsAffx.16446.1.S1_at--202--7191Chr07:16324942..16324966 (25 bp)
GTCGGAGCCTCCTCGATACATCGGC
LOC_Os07g27980
OsAffx.16446.1.S1_at--133--6471Chr07:16324928..16324952 (25 bp)
GATACATCGGCGCTGTCGCTAGATT
LOC_Os07g27980
OsAffx.16446.1.S1_at--482--9351Chr07:16324913..16324937 (25 bp)
TCGCTAGATTTGCTTGGCCAGGTGC
LOC_Os07g27980
OsAffx.16446.1.S1_at--368--6311Chr07:16323293..16323317 (25 bp)
GATGACAAGGGACCTCGACGAGCAC
LOC_Os07g27980
OsAffx.16446.1.S1_at--664--4091Chr07:16323278..16323302 (25 bp)
CGACGAGCACGGTGCGACGTTTTTG
LOC_Os07g27980
OsAffx.16446.1.S1_at--857--1891Chr07:16323241..16323265 (25 bp)
ACGTCGCAGTCACGCTGTAGGAGCT
LOC_Os07g27980
OsAffx.16446.1.S1_at--671--1831Chr07:16323230..16323254 (25 bp)
ACGCTGTAGGAGCTCTTCGATAGCA
LOC_Os07g27980
OsAffx.16446.1.S1_at--136--1791Chr07:16323198..16323222 (25 bp)
ACCGTCGTGCCAAGGCTCAAGGTGT
LOC_Os07g27980
Target Sequence 
TTACAATGAAATCGATACACCTCCCCAGCGACGGAGCAAAGTCGCCCAAGATGCCGACGAAGAAGAGGCCGTGGGAGTGC
TGCAACGACGTCGAGGAGGCGTCGTCGCCGTCGGGCCTGCTCATCTGCAGCGACGTCTACTGGGGAGCCGACCCGGGCCC
CTTCTGCACCCCGAGGCCGTGGGAAGATTGCTGCGACAACGCCATCTGCAACAGGTCTCTCCCACCGATCTGCCAGTGCG
GCGACGAGGTGGATCGTGCGCCGCCGCGTGCAAGGATTGCCAGCCGGTGGAGTCGTCGTCGTCGTCGTCGTCGGAGCCTC
CTCGATACATCGGCGCTGTCGCTAGATTTGCTTGGCCAGGTGCTCGACCGGGTGGCTCCGTGTCGTCGCGGCGGGTGGAG
CTGTATGGTTGGATGACAAGGGACCTCGACGAGCACGGTGCGACGTTTTTGGAGGGCAGCGAGACGTCGCAGTCACGCTG
TAGGAGCTCTTCGATAGCAGGGGCGCACCGTCGTGCCAAGGCTCAAGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis