Browse Element(s) Details


OsAffx.16449.1.S1_at

Description gb:NM_187218.1
DB_XREF= gi:34901521
GEN=P0473C09.18
TID=OsAffx.16449.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) transposase-like (P0473C09.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2815010/11hAT dimerisation domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28130Os.35344.18.S1_x_at10/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130Os.35344.3.S1_x_at8/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130OsAffx.22940.5.S1_x_at2/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28140OsAffx.28639.1.S1_at11/117+16433827..16434144hypothetical protein
LOC_Os07g28150OsAffx.16449.1.S1_at10/117+16435044..16435511hAT dimerisation domain-containing protein, putative
LOC_Os07g28160OsAffx.5473.1.S1_at11/117+16436807..16440447Cytochrome P450 family protein
LOC_Os07g28170OsAffx.28640.1.S1_at11/117+16445403..16448876expressed protein
LOC_Os07g28170Os.6809.2.S1_x_at1/117+16445403..16448876expressed protein
LOC_Os07g28180OsAffx.28641.1.S1_at11/117+16452896..16453628hypothetical protein
LOC_Os07g28190NANA7+16457764..16458904retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16449.1.S1_at--930--11Chr07:16435517..16435541 (25 bp)
ATTGGCAAAAGACGTCAAGCCCGTG
NONE
OsAffx.16449.1.S1_at--128--10751Chr07:16435451..16435475 (25 bp)
TTGCACTTGATGTTGATGATCCTGG
LOC_Os07g28150
OsAffx.16449.1.S1_at--573--7691Chr07:16435427..16435451 (25 bp)
GGGTATGCAAATGCTCTGTCACTTT
LOC_Os07g28150
OsAffx.16449.1.S1_at--277--2291Chr07:16435419..16435443 (25 bp)
AAATGCTCTGTCACTTTGTTTACAA
LOC_Os07g28150
OsAffx.16449.1.S1_at--533--8551Chr07:16435375..16435399 (25 bp)
TGGAGGCCATGCTAGAGGTGAAATC
LOC_Os07g28150
OsAffx.16449.1.S1_at--1038--6251Chr07:16435180..16435204 (25 bp)
GATGGGACTGTTTGAACCCTGTTGT
LOC_Os07g28150
OsAffx.16449.1.S1_at--492--2611Chr07:16435166..16435190 (25 bp)
AACCCTGTTGTGGACTTGCTACTTA
LOC_Os07g28150
OsAffx.16449.1.S1_at--1162--6051Chr07:16435139..16435163 (25 bp)
GAGTTTAATGATCGCTTTACTGAAA
LOC_Os07g28150
OsAffx.16449.1.S1_at--616--9751Chr07:16435107..16435131 (25 bp)
TAATTTGCTTACTTATATGGCTGCT
LOC_Os07g28150
OsAffx.16449.1.S1_at--871--271Chr07:16435093..16435117 (25 bp)
ATATGGCTGCTTTCAATCCTAAGGA
LOC_Os07g28150
OsAffx.16449.1.S1_at--945--3731Chr07:16435075..16435099 (25 bp)
CTAAGGATTCTTTTGCTGATTTCAA
LOC_Os07g28150
Target Sequence
ATTGGCAAAAGACGTCAAGCCCGTGGGCTCATGGATTATCTTCAAGATTTTGATTTTGTGTTTCATTTGCACTTGATGTT
GATGATCCTGGGGTATGCAAATGCTCTGTCACTTTGTTTACAAAGGAAAGATGGAGGTATATTGGAGGCCATGCTAGAGG
TGAAATCAACTAAGGAAAAATTTCAGGCGATTAGAGATGATGGCTGGGAATCTTTATTGGAGAAAATGTATTCATTTTAT
GATGAGCATGGAATTCTTAGGCTAGATATGGAAGAGGAGTATATTGACCGTCATAAACCAAGGAAAAAGATAAATCACAC
TAATTACCAACAGTATAGATGGGACTGTTTGAACCCTGTTGTGGACTTGCTACTTATTGAGTTTAATGATCGCTTTACTG
AAACAAATTCTAATTTGCTTACTTATATGGCTGCTTTCAATCCTAAGGATTCTTTTGCTGATTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis