Browse Element(s) Details


OsAffx.16572.2.S1_x_at

Description tigr:9630.m05547
TID=OsAffx.16572.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5592011/11expressed protein
LOC_Os05g048001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55880OsAffx.3083.1.S1_at9/112+34201091..34203972EF hand family protein, expressed
LOC_Os02g55890Os.12069.1.S1_at11/112+34204555..34209016Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g55900OsAffx.3084.1.S1_at11/112+34210933..34214744hypothetical protein
LOC_Os02g55910Os.5288.1.S1_a_at11/112+34217788..34221579Monogalactosyldiacylglycerol synthase family protein, expressed
LOC_Os02g55920OsAffx.16572.2.S1_x_at11/112+34224092..34225627expressed protein
LOC_Os02g55930OsAffx.24888.1.S1_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.24888.1.S1_x_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.12939.2.S1_at1/112+34231867..34232601hypothetical protein
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
LOC_Os02g55959NANA2+34248460..34248929NA
LOC_Os02g55970Os.17247.1.S1_at11/112+34249895..34254683Clathrin assembly protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16572.2.S1_x_at--738--1971Chr02:34224720..34224744 (25 bp)
ACTCCGAGACCTTCGATTCCTACTT
LOC_Os02g55920
OsAffx.16572.2.S1_x_at--238--91Chr02:34224705..34224729 (25 bp)
ATTCCTACTTCTCCCCGCAAGAGAA
LOC_Os02g55920
OsAffx.16572.2.S1_x_at--577--4111Chr02:34224690..34224714 (25 bp)
CGCAAGAGAAGCCAGACCACGGGAT
LOC_Os02g55920
OsAffx.16572.2.S1_x_at--1118--2771Chr02:34224687..34224711 (25 bp)
AAGAGAAGCCAGACCACGGGATCAT
LOC_Os02g55920
OsAffx.16572.2.S1_x_at--109--1451Chr02:34224684..34224708 (25 bp)
AGAAGCCAGACCACGGGATCATCAG
LOC_Os02g55920
OsAffx.16572.2.S1_x_at--207--7671Chr02:34224670..34224694 (25 bp)
GGGATCATCAGAGGCGTCATCTTCT
LOC_Os02g55920
OsAffx.16572.2.S1_x_at--35--10651Chr02:34224646..34224670 (25 bp)
TTCGCCGGGATCCTCGGATGCCAGC
LOC_Os02g55920
OsAffx.16572.2.S1_x_at--644--4272Chr05:2262430..2262524 (24 bp)
CCTCGGATGCCAGCGGGAGGACGAC
LOC_Os05g04800
OsAffx.16572.2.S1_x_at--426--9451Chr02:34224571..34224595 (25 bp)
TCGGCCCGGCCGTTCGTGAGCGCGG
LOC_Os02g55920
OsAffx.16572.2.S1_x_at--684--8911Chr02:34224507..34224531 (25 bp)
TGAGCCAGCGGGAGAAGCTCGCGGC
LOC_Os02g55920
OsAffx.16572.2.S1_x_at--689--1291Chr02:34224474..34224498 (25 bp)
AGATCCTGCGGCGAGTCCGGGAGGC
LOC_Os02g55920
Target Sequence 
ACTCCGAGACCTTCGATTCCTACTTCTCCCCGCAAGAGAAGCCAGACCACGGGATCATCAGAGGCGTCATCTTCTTCGCC
GGGATCCTCGGATGCCAGCGGGAGGACGACGACGCCGACGACGGCGGCGGCGGCGGCGCGGCGACGTCGTCGGCCCGGCC
GTTCGTGAGCGCGGTGGCGCGGTTCGCGGTGCAGGTGGAGGTCGGCGAGGGGCTGAGCCAGCGGGAGAAGCTCGCGGCGA
AGCTGGAGATCCTGCGGCGAGTCCGGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16572.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis