Browse Element(s) Details


OsAffx.16586.1.S1_x_at

Description tigr:9635.m03621
TID=OsAffx.16586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cellulose synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3661011/11Cellulose synthase family protein, expressed
LOC_Os01g546201/11Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os12g368901/11cellulose synthase family protein, putative, expressed
LOC_Os07g367001/11Cellulose synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36590Os.32819.1.S1_at11/117+21875197..21881678KI domain interacting kinase 1, putative, expressed
LOC_Os07g36600Os.27293.2.S1_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_a_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_s_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_at7/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36610OsAffx.16586.1.S1_x_at11/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36610OsAffx.20192.1.S1_at2/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36620NANA7+21906301..21906751hypothetical protein
LOC_Os07g36630Os.52482.1.S1_at11/117+21908532..21913590Cellulose synthase family protein, expressed
LOC_Os07g36640OsAffx.16587.1.S1_at11/117+21921991..21922663hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0006970biological_processresponse to osmotic stress
GO:0009414biological_processresponse to water deprivation
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16586.1.S1_x_at--313--1051Chr07:21900520..21900544 (25 bp)
AGGTGATCGGCCTGGTCGAGATCAA
LOC_Os07g36610
OsAffx.16586.1.S1_x_at--202--8633Chr01:31754673..31754694 (22 bp)
TGGTGGCGCAACGAGCAGTTCTACA
LOC_Os01g54620
OsAffx.16586.1.S1_x_at--870--5932Chr07:21989550..21989569 (20 bp)
GAGCAGTTCTACATGATCGGCGCCA
LOC_Os07g36700
OsAffx.16586.1.S1_x_at--655--4671Chr07:21900416..21900440 (25 bp)
GCGGTGCTGCACATCGTGCTCAAGA
LOC_Os07g36610
OsAffx.16586.1.S1_x_at--432--9711Chr07:21900397..21900421 (25 bp)
TCAAGAGGCTCCTCGGACTGAAGGG
LOC_Os07g36610
OsAffx.16586.1.S1_x_at--1119--9131Chr07:21900370..21900394 (25 bp)
TGCGGTTCAAGCTGACGGCGAAGCA
LOC_Os07g36610
OsAffx.16586.1.S1_x_at--731--8751Chr07:21900310..21900334 (25 bp)
TGTACGACGTGCACTGGTCGCCGCT
LOC_Os07g36610
OsAffx.16586.1.S1_x_at--424--871Chr07:21900263..21900287 (25 bp)
ATGGCGGTGAACGTGACTGCCATCG
LOC_Os07g36610
OsAffx.16586.1.S1_x_at--596--8791Chr07:21900166..21900190 (25 bp)
TGTTCAACGTGTGGGTCCTGGTGCT
LOC_Os07g36610
OsAffx.16586.1.S1_x_at--859--5951Chr07:21900105..21900129 (25 bp)
GAGCAAGAGGCCGTGCGCGCTCTTC
LOC_Os07g36610
OsAffx.16586.1.S1_x_at--842--7991Chr07:21899987..21900011 (25 bp)
GGATGGTCTCGTGGCGCCACTGCCA
LOC_Os07g36610
Target Sequence 
AGGTGATCGGCCTGGTCGAGATCAAGTGGGCGGGGCTCACCCTGCTCGACTGGTGGCGCAACGAGCAGTTCTACATGATC
GGCGCCACGGGGGTGTACCTGGCGGCGGTGCTGCACATCGTGCTCAAGAGGCTCCTCGGACTGAAGGGCGTGCGGTTCAA
GCTGACGGCGAAGCAGCTGGCCGGCGGCGCGAGGGAGAGGTTCGCGGAGCTGTACGACGTGCACTGGTCGCCGCTGCTGG
CGCCGACGGTGGTGGTGATGGCGGTGAACGTGACTGCCATCGGCGCGGCGGCGGGGAAGGCGGTCGTCGGGGGGTGGACG
CCGGCGCAGGTCGCCGGCGCGTCGGCGGGGCTGGTGTTCAACGTGTGGGTCCTGGTGCTGCTCTACCCGTTCGCGCTCGG
GATCATGGGGAGGTGGAGCAAGAGGCCGTGCGCGCTCTTCGCGCTGCTCGTGGCCGCGTGCGCGGCGGTCGCGGCGGGGT
TCGTCGCCGTCCATGCCGTGCTCGCCGCCGGCTCCGCCGCGCCGTCCTGGTTGGGATGGTCTCGTGGCGCCACTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16586.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis