Browse Element(s) Details


OsAffx.16599.1.S1_at

Description tigr:9635.m03728
TID=OsAffx.16599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3757011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37540OsAffx.5562.1.S1_at11/117+22484437..22484763hypothetical protein
LOC_Os07g37550Os.28216.2.S1_s_at11/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.2.S1_a_at8/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.3.S1_x_at3/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37560Os.10019.1.S1_a_at11/117+22487133..22496733Myosin head family protein, expressed
LOC_Os07g37570Os.5422.1.S1_s_at11/117+22504860..22507507expressed protein
LOC_Os07g37570OsAffx.16599.1.S1_at11/117+22504860..22507507expressed protein
LOC_Os07g37580Os.10443.1.S1_at8/117+22511401..22517062Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os07g37590Os.35344.18.S1_x_at11/117+22519597..22521364hypothetical protein
LOC_Os07g37590Os.35344.3.S1_x_at9/117+22519597..22521364hypothetical protein
LOC_Os07g37590OsAffx.22940.5.S1_x_at3/117+22519597..22521364hypothetical protein
LOC_Os07g37600OsAffx.28804.2.S1_s_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_x_at11/117+22531946..22532816hypothetical protein
LOC_Os07g37600OsAffx.28804.1.S1_at11/117+22531946..22532816hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16599.1.S1_at--771--8651Chr07:22504990..22505014 (25 bp)
TGGGCGCACCAGAACGTAATCTTGC
LOC_Os07g37570
OsAffx.16599.1.S1_at--947--3571Chr07:22505025..22505049 (25 bp)
CTTCCTTTTCCTAGAGTTTTCAGTG
LOC_Os07g37570
OsAffx.16599.1.S1_at--237--6931Chr07:22505047..22505071 (25 bp)
GTGGTTTCTGGGTGTCCCACTTATC
LOC_Os07g37570
OsAffx.16599.1.S1_at--1031--10411Chr07:22505067..22505091 (25 bp)
TTATCTTTCCTTGTGATTGCAGCCA
LOC_Os07g37570
OsAffx.16599.1.S1_at--670--7411Chr07:22505079..22505103 (25 bp)
GTGATTGCAGCCATGGATACGTCGG
LOC_Os07g37570
OsAffx.16599.1.S1_at--1036--5651Chr07:22505927..22505951 (25 bp)
GACATACCTGTCCTGAAACGCTTAG
LOC_Os07g37570
OsAffx.16599.1.S1_at--918--2471Chr07:22505962..22505985 (24 bp)
AACAGCTCAGTTCTTTGTGTCCAGT
LOC_Os07g37570
OsAffx.16599.1.S1_at--94--2211Chr07:22506091..22506115 (25 bp)
ACAAGCATTGCCCAAGACGTGTCAT
LOC_Os07g37570
OsAffx.16599.1.S1_at--847--1391Chr07:22506105..22506129 (25 bp)
AGACGTGTCATCTTTTCTGGGATAA
LOC_Os07g37570
OsAffx.16599.1.S1_at--812--1231Chr07:22506174..22506261 (25 bp)
AGTTGCCGATGCTGCATGCTAACGG
LOC_Os07g37570
OsAffx.16599.1.S1_at--720--3511Chr07:22506251..22506275 (25 bp)
CATGCTAACGGTATGGTTTCGCAAA
LOC_Os07g37570
Target Sequence 
TGGGCGCACCAGAACGTAATCTTGCCCTTCCGTTTCTTCCTTTTCCTAGAGTTTTCAGTGGTTTCTGGGTGTCCCACTTA
TCTTTCCTTGTGATTGCAGCCATGGATACGTCGGAGGGGAAGCAGACGTCTTCAGTATCGGTTGCGCTCACTTCGATTAA
CAAAAAAACAGAAGACATACCTGTCCTGAAACGCTTAGACCCAAAACAAACAGCTCAGTTCTTTGTGTCCAGTAGACAAG
CATTGCCCAAGACGTGTCATCTTTTCTGGGATAAATGGGTTGAAGTAAAAGCTGCTGTAAAATTGAGAAGAAAAGTCAAG
TTGCCGATGCTGCATGCTAACGGTATGGTTTCGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis