Browse Element(s) Details


OsAffx.16624.1.S1_at

Description tigr:9635.m03894
TID=OsAffx.16624.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3908011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein
LOC_Os07g39100OsAffx.16626.1.S1_at11/117+23430025..23430687hypothetical protein
LOC_Os07g39110Os.55217.1.S1_at11/117+23431681..23433157expressed protein
LOC_Os07g39120Os.25190.1.A1_x_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120Os.25190.1.A1_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120OsAffx.16627.1.S1_at9/117+23436812..23439851hypothetical protein
LOC_Os07g39130NANA7+23441148..23441426hypothetical protein
LOC_Os07g39140OsAffx.28819.1.S1_at11/117+23442507..23442845hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16624.1.S1_at--492--3351Chr07:23421667..23421691 (25 bp)
CACGCGCGATCAAGAGCTGCAAGAA
LOC_Os07g39080
OsAffx.16624.1.S1_at--154--5191Chr07:23421606..23421630 (25 bp)
GCAAGGATGCGCGAGGACGAGAAGC
LOC_Os07g39080
OsAffx.16624.1.S1_at--207--1831Chr07:23421468..23421492 (25 bp)
ACGCGCGATCAAGAAGTGCAAGAGC
LOC_Os07g39080
OsAffx.16624.1.S1_at--710--9711Chr07:23421460..23421484 (25 bp)
TCAAGAAGTGCAAGAGCGACGAGCG
LOC_Os07g39080
OsAffx.16624.1.S1_at--831--1371Chr07:23421415..23421439 (25 bp)
AGAGCGCGGGACAATGCGCGACGAC
LOC_Os07g39080
OsAffx.16624.1.S1_at--53--4251Chr07:23421335..23421359 (25 bp)
CCGGATCCCAGTGCGGCGGAGAACT
LOC_Os07g39080
OsAffx.16624.1.S1_at--1146--1991Chr07:23421313..23421337 (25 bp)
ACTCGCTGCGCGAGGCCATTGAGAG
LOC_Os07g39080
OsAffx.16624.1.S1_at--219--51Chr07:23421296..23421320 (25 bp)
ATTGAGAGGGCCCGCCCACACATGC
LOC_Os07g39080
OsAffx.16624.1.S1_at--315--3311Chr07:23421280..23421304 (25 bp)
CACACATGCGGAGGGACATCGCGCG
LOC_Os07g39080
OsAffx.16624.1.S1_at--774--6031Chr07:23421233..23421257 (25 bp)
GAGATCGCCAGCATGGTCAGGACCG
LOC_Os07g39080
OsAffx.16624.1.S1_at--116--6391Chr07:23421231..23421255 (25 bp)
GATCGCCAGCATGGTCAGGACCGTC
LOC_Os07g39080
Target Sequence 
CACGCGCGATCAAGAGCTGCAAGAACGGCGAGCGGGGGCAAGAGAAGGACGCCGAGAGCGCGCAAGGATGCGCGAGGACG
AGAAGCCCGCCGGTGCGTTCCGCCAGGGCCACCACACCGGCGGCTTCGCCGTCGCGCTCGAAGAAAGAGACCCCGGTCCG
CGCCCACGCCGCCGTCCGCGGCGACGACGCGACGCCGCCACGCGCGATCAAGAAGTGCAAGAGCGACGAGCGGAGGCAAG
AGAAGGACGGCGAGAGCGCGGGACAATGCGCGACGACGAGCAGCCCGCGCGTACAGCCCTCACCGACGCCGTCGCCGGCG
CCGGCGGCGCGGCCGGATCCCAGTGCGGCGGAGAACTCGCTGCGCGAGGCCATTGAGAGGGCCCGCCCACACATGCGGAG
GGACATCGCGCGGCAGAGGGAGGCGGCGCGACGGGAGATCGCCAGCATGGTCAGGACCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis