Browse Element(s) Details


OsAffx.16625.1.S1_at

Description tigr:9635.m03895
TID=OsAffx.16625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3909011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein
LOC_Os07g39100OsAffx.16626.1.S1_at11/117+23430025..23430687hypothetical protein
LOC_Os07g39110Os.55217.1.S1_at11/117+23431681..23433157expressed protein
LOC_Os07g39120Os.25190.1.A1_x_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120Os.25190.1.A1_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120OsAffx.16627.1.S1_at9/117+23436812..23439851hypothetical protein
LOC_Os07g39130NANA7+23441148..23441426hypothetical protein
LOC_Os07g39140OsAffx.28819.1.S1_at11/117+23442507..23442845hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16625.1.S1_at--154--5351Chr07:23424774..23424798 (25 bp)
GAAGATCTTTGAGCTTGAACCTAAA
LOC_Os07g39090
OsAffx.16625.1.S1_at--156--3291Chr07:23424724..23424748 (25 bp)
CAAACATGTATTCGGCTTCTGGGAG
LOC_Os07g39090
OsAffx.16625.1.S1_at--821--1491Chr07:23424687..23424711 (25 bp)
AGCACAGCTGCGGAAATCTATGAGA
LOC_Os07g39090
OsAffx.16625.1.S1_at--534--291Chr07:23424596..23424620 (25 bp)
ATAGCTCATGATAAGTCCCATCCCT
LOC_Os07g39090
OsAffx.16625.1.S1_at--894--2831Chr07:23424584..23424608 (25 bp)
AAGTCCCATCCCTGGTACGATAGGA
LOC_Os07g39090
OsAffx.16625.1.S1_at--81--6571Chr07:23424525..23424549 (25 bp)
GATTCGTCAAGGATATGTGCCCAAT
LOC_Os07g39090
OsAffx.16625.1.S1_at--1013--9491Chr07:23423995..23424015 (21 bp)
TCTCCGCCACTTCGAAATCAGTGAT
LOC_Os07g39090
OsAffx.16625.1.S1_at--973--2811Chr07:23423860..23423884 (25 bp)
AAGTTCCCCTTGCATTCTATAAGCC
LOC_Os07g39090
OsAffx.16625.1.S1_at--875--391Chr07:23423794..23423818 (25 bp)
ATCAGCGCTGATCTTTGGTCAATAC
LOC_Os07g39090
OsAffx.16625.1.S1_at--353--8591Chr07:23423779..23423803 (25 bp)
TGGTCAATACGATCGGCACTCCAAG
LOC_Os07g39090
OsAffx.16625.1.S1_at--363--5751Chr07:23423753..23423777 (25 bp)
GACGGAAGAGATTGGCTGCCTTGTT
LOC_Os07g39090
Target Sequence 
GAAGATCTTTGAGCTTGAACCTAAAAGCATGGGATCTCATGTAATTTTGTCAAACATGTATTCGGCTTCTGGGAGATGGA
ATGAAGCAGCACAGCTGCGGAAATCTATGAGAATCAAAGGTATGAAGAAGGAACCAGCTTGCAGTTGGATTGAAGTGAAG
AACAAATTGCATGTGTTCATAGCTCATGATAAGTCCCATCCCTGGTACGATAGGATTATTGATGCACTGAATGTTTACTC
AGAGCAGATGATTCGTCAAGGATATGTGCCCAATATGGAGGATGTTTTACAGGACATTGAAGAAGAGCAGAAGAGAGAGG
GGCAGCCGCCACTCGACGCCTCTGCCATCTACAATTCTTCTCTCCGCCACTTCGAAATCAGTGATTCCAAGTTCCCCTTG
CATTCTATAAGCCTGTCTTATGACAACTTGGCATGGATGTTGGCGCTGGTGGAGATCAGCGCTGATCTTTGGTCAATACG
ATCGGCACTCCAAGGGACGGAAGAGATTGGCTGCCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis