Browse Element(s) Details


OsAffx.16630.1.S1_at

Description tigr:9635.m03904
TID=OsAffx.16630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g391808/11hypothetical protein
LOC_Os03g534191/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39150OsAffx.32166.1218.S1_x_at9/117+23454664..23456106hypothetical protein
LOC_Os07g39170NANA7+23461676..23466848retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39180OsAffx.16630.1.S1_at8/117+23469634..23470022hypothetical protein
LOC_Os07g39190Os.55665.1.S1_at11/117+23475602..23476621expressed protein
LOC_Os07g39200OsAffx.5575.1.S1_at10/117+23477145..23477603hypothetical protein
LOC_Os07g39210OsAffx.16631.1.S1_at11/117+23478203..23478930expressed protein
LOC_Os07g39220Os.54781.1.S1_at10/117+23482115..23483650BES1/BZR1 homolog protein 1, putative, expressed
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16630.1.S1_at--26--10711Chr07:23470682..23470706 (25 bp)
TTGCGTATGTCCAATGTTGTTCTTT
NONE
OsAffx.16630.1.S1_at--719--8211Chr07:23470609..23470633 (25 bp)
GGCAATTGGGCTTGGGACAGTCTAT
NONE
OsAffx.16630.1.S1_at--213--7592Chr07:23470568..23470589 (22 bp)
GGGCTAAGGGCATCTGCCTCAGCAT
NONE
OsAffx.16630.1.S1_at--75--4471Chr07:23469869..23469889 (21 bp)
GCCTCAGCATAGCTCTAGCAAGCAA
LOC_Os07g39180
OsAffx.16630.1.S1_at--421--8372Chr07:23469843..23469867 (25 bp)
GGCGTGTATGTCAACCATGGACCAG
LOC_Os07g39180
OsAffx.16630.1.S1_at--885--5831Chr07:23469824..23469848 (25 bp)
GACCAGAAGTCCCTGAACTAGTCGG
LOC_Os07g39180
OsAffx.16630.1.S1_at--3--4091Chr07:23469763..23469787 (25 bp)
CGAGCCTACCGCTGCTGTGAAACAG
LOC_Os07g39180
OsAffx.16630.1.S1_at--37--1451Chr07:23469740..23469764 (25 bp)
AGCAACTTCGGAGACGTCGGGACAA
LOC_Os07g39180
OsAffx.16630.1.S1_at--194--2471Chr07:23469706..23469730 (25 bp)
AACACCAGGGCATCCTTTGGCTTGG
LOC_Os07g39180
OsAffx.16630.1.S1_at--915--10231Chr07:23469691..23469715 (25 bp)
TTTGGCTTGGTTTGCCATCGAGCAC
LOC_Os07g39180
OsAffx.16630.1.S1_at--653--4331Chr07:23469677..23469701 (25 bp)
CCATCGAGCACCTGGCATGTGTGGT
LOC_Os07g39180
Target Sequence 
TTGCGTATGTCCAATGTTGTTCTTTGGATGGATATTACCAAGTAGATATTACTCAAGAATGGAAAGGCACTTGGGCAATT
GGGCTTGGGACAGTCTATGAGTGCTGGGGTAGATCAGGGGCTAAGGGCATCTGCCTCAGCATAGCTCTAGCAAGCAATGG
CGTGTATGTCAACCATGGACCAGAAGTCCCTGAACTAGTCGGGGATTTCGAAGCCATTGGTAGAGAAGAGCGCAACGACG
AGCCTACCGCTGCTGTGAAACAGCAACTTCGGAGACGTCGGGACAAGAATCAGGCAACACCAGGGCATCCTTTGGCTTGG
TTTGCCATCGAGCACCTGGCATGTGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis