Browse Element(s) Details


OsAffx.16631.1.S1_at

Description tigr:9635.m03907
TID=OsAffx.16631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3921011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39150OsAffx.32166.1218.S1_x_at9/117+23454664..23456106hypothetical protein
LOC_Os07g39170NANA7+23461676..23466848retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39180OsAffx.16630.1.S1_at8/117+23469634..23470022hypothetical protein
LOC_Os07g39190Os.55665.1.S1_at11/117+23475602..23476621expressed protein
LOC_Os07g39200OsAffx.5575.1.S1_at10/117+23477145..23477603hypothetical protein
LOC_Os07g39210OsAffx.16631.1.S1_at11/117+23478203..23478930expressed protein
LOC_Os07g39220Os.54781.1.S1_at10/117+23482115..23483650BES1/BZR1 homolog protein 1, putative, expressed
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein
LOC_Os07g39250OsAffx.16632.1.S1_at11/117+23495385..23498593expressed protein
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16631.1.S1_at--804--9791Chr07:23478820..23478844 (25 bp)
TAACAAAGACTTCCTCCACAACGAG
LOC_Os07g39210
OsAffx.16631.1.S1_at--874--1231Chr07:23478794..23478818 (25 bp)
AGTTCCAGCGTGTGATGCGCGACGT
LOC_Os07g39210
OsAffx.16631.1.S1_at--845--9931Chr07:23478631..23478777 (25 bp)
TACGTTCCCGGAGGATATGCGTTGA
LOC_Os07g39210
OsAffx.16631.1.S1_at--194--10771Chr07:23478610..23478634 (25 bp)
TTGAGGATTCTCACAGACCCAGCTA
LOC_Os07g39210
OsAffx.16631.1.S1_at--103--6071Chr07:23478565..23478589 (25 bp)
GAGTACTACCGTAAGGCCGGTCTGA
LOC_Os07g39210
OsAffx.16631.1.S1_at--443--4251Chr07:23478438..23478573 (25 bp)
CCGGTCTGATTGAAGGCCAAGTCTG
LOC_Os07g39210
OsAffx.16631.1.S1_at--176--1631Chr07:23478411..23478435 (25 bp)
AGCGTTATAACATCTTCGAGGAGGT
LOC_Os07g39210
OsAffx.16631.1.S1_at--655--931Chr07:23478308..23478332 (25 bp)
AGGCAGAGACGCGACCCCTGATTGC
LOC_Os07g39210
OsAffx.16631.1.S1_at--816--8791Chr07:23478290..23478314 (25 bp)
TGATTGCCCCAATGAGGTGAAGAAA
LOC_Os07g39210
OsAffx.16631.1.S1_at--655--8871Chr07:23478258..23478282 (25 bp)
TGATGGACTCAGATCGCGAAGCGGT
LOC_Os07g39210
OsAffx.16631.1.S1_at--920--9191Chr07:23478234..23478258 (25 bp)
TGCCATGCAACCTCCCTCAGGAGTG
LOC_Os07g39210
Target Sequence 
TAACAAAGACTTCCTCCACAACGAGGAGTTCCAGCGTGTGATGCGCGACGTCGTCGTCGGCCCGGATTACGTTCCCGGAG
GATATGCGTTGAGGATTCTCACAGACCCAGCTACTGCGTTCGAAGAGCTCCTAGAGTACTACCGTAAGGCCGGTCTGATT
GAAGGCCAAGTCTGGAAGCGTTATAACATCTTCGAGGAGGTGGAGGGGTTGGATAACTCGCAGGATGAGATAAAGATGGA
GGAAGAGCCGATGAAAGTGGAAGAGGCCGTTCGCTGCCGAGGCAGAGACGCGACCCCTGATTGCCCCAATGAGGTGAAGA
AACGGCGCTTGATGGACTCAGATCGCGAAGCGGTGCCATGCAACCTCCCTCAGGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis