Browse Element(s) Details


OsAffx.16647.1.S1_at

Description tigr:9635.m03988
TID=OsAffx.16647.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g399509/11Mitotic checkpoint protein BUB3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39920Os.50873.1.S1_x_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39920Os.50281.1.S1_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39930OsAffx.16646.1.S1_at11/117+23951710..23954078expressed protein
LOC_Os07g39940OsAffx.28832.1.S1_at10/117+23955321..23956573Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g39950OsAffx.16647.1.S1_at9/117+23964188..23968364Mitotic checkpoint protein BUB3, putative, expressed
LOC_Os07g39960Os.55561.1.S1_at11/117+23971763..23975024Zinc finger, C2H2 type family protein
LOC_Os07g39970Os.50628.1.S1_at11/117+23978845..23979556Zinc finger, C2H2 type family protein, expressed
LOC_Os07g39980Os.23164.1.S1_a_at11/117+23983584..23988259expressed protein
LOC_Os07g39990Os.52448.2.S1_at11/117+23989712..23990632expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16647.1.S1_at--952--8632Chr07:23964623..23964647 (25 bp)
TGGGTTGCTGCTTTCACGACGACTC
LOC_Os07g39950
OsAffx.16647.1.S1_at--570--8051NONE
GGAGATCACTCATGTTGGCCTTCAG
NONE
OsAffx.16647.1.S1_at--560--7611Chr07:23965050..23965074 (25 bp)
GGGAATTATTTCTTGGTACGCCATG
LOC_Os07g39950
OsAffx.16647.1.S1_at--872--6351Chr07:23965074..23965098 (25 bp)
GATGCCGCAGTTAGTTGTGTCGAGT
LOC_Os07g39950
OsAffx.16647.1.S1_at--403--211Chr07:23966433..23966457 (25 bp)
ATTTGCGCAGTATGTCTAGGCCTGA
LOC_Os07g39950
OsAffx.16647.1.S1_at--406--9491NONE
TCTCCACTAAGACACGGCACATTTG
NONE
OsAffx.16647.1.S1_at--149--7351Chr07:23967910..23967934 (25 bp)
GTGAACCTTTGGGATGGCGCTAACA
LOC_Os07g39950
OsAffx.16647.1.S1_at--639--531Chr07:23968080..23968104 (25 bp)
ATCGCTGCTCTGTCTTTCAGTAGGG
LOC_Os07g39950
OsAffx.16647.1.S1_at--123--6671Chr07:23968122..23968146 (25 bp)
GTTGCATCCAGTTACACTTACGAGG
LOC_Os07g39950
OsAffx.16647.1.S1_at--529--4471Chr07:23968262..23968286 (25 bp)
GCCTGACGCAATCTTTATCCGTGAT
LOC_Os07g39950
OsAffx.16647.1.S1_at--274--5331Chr07:23968293..23968317 (25 bp)
GAAGTACAAGTAAAGCCCAGGCCCA
LOC_Os07g39950
Target Sequence 
TGGGTTGCTGCTTTCACGACGACTCCTCGGGGTTCAGTGCCAGCGCCGACAACACCGTGCGGAGATCACTCATGTTGGCC
TTCAGTTCTGGTGGGAATTATTTCTTGGTACGCCATGATGCCGCAGTTAGTTGTGTCGAGTACTCCTACTCTACTGTATC
AGGATATAACTTGGTTGTCGCAACAGCAGGAAGGCATGTGAATGTTTATGATTTGCGCAGTATGTCTAGGCCTGAGCAAC
AGAGGGAGTCTCCACTAAGACACGGCACATTTGCCACTGGTGGATGTGATAGATTTGTGAACCTTTGGGATGGCGCTAAC
AGAAGGAAACTGTTTCAATTTCCCAGATACCCATCCAGCATCGCTGCTCTGTCTTTCAGTAGGGATGGCCGTCTGCTTGC
TGTTGCATCCAGTTACACTTACGAGGAGGGAGACATACCCCATCCGCCTGACGCAATCTTTATCCGTGATGTCAACGAAG
TACAAGTAAAGCCCAGGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis