Browse Element(s) Details


OsAffx.16676.1.S1_at

Description tigr:9635.m04156
TID=OsAffx.16676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4154011/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41510OsAffx.22947.1.S1_x_at9/117+24873632..24879999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41510OsAffx.22947.2.S1_x_at7/117+24873632..24879999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41510OsAffx.22947.3.S1_x_at5/117+24873632..24879999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41510OsAffx.22947.5.S1_at2/117+24873632..24879999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41510OsAffx.22947.5.S1_x_at2/117+24873632..24879999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41520OsAffx.22947.1.S1_x_at9/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41520OsAffx.22947.2.S1_x_at7/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41520OsAffx.22947.3.S1_x_at5/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41520OsAffx.22947.5.S1_at2/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41520OsAffx.22947.5.S1_x_at2/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41530NANA7+24892402..24895513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41540OsAffx.16676.1.S1_at11/117+24900227..24901567Sulfotransferase domain containing protein
LOC_Os07g41550OsAffx.28860.1.S1_at11/117+24903637..24904011hypothetical protein
LOC_Os07g41560NANA7+24904606..24905140Flavonol sulfotransferase, putative
LOC_Os07g41570Os.50568.1.S1_x_at11/117+24906808..24910523DEAD/DEAH box helicase family protein, expressed
LOC_Os07g41580Os.49795.1.S1_at11/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41580OsAffx.23994.1.S1_x_at1/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16676.1.S1_at--915--8311Chr07:24900695..24900719 (25 bp)
GGCTAAGACCTCATCATTATCTGAT
LOC_Os07g41540
OsAffx.16676.1.S1_at--454--6111Chr07:24900661..24900685 (25 bp)
GAGTCCATCACCATGTCATTATCTG
LOC_Os07g41540
OsAffx.16676.1.S1_at--105--1151Chr07:24900627..24900651 (25 bp)
AGTCCATCCGTGAGGGTGCATACTT
LOC_Os07g41540
OsAffx.16676.1.S1_at--381--2651Chr07:24900550..24900574 (25 bp)
AAGCCGGACAAGGTGCTATTCCTAA
LOC_Os07g41540
OsAffx.16676.1.S1_at--604--6151Chr07:24900517..24900541 (25 bp)
GAGGTTCTACGCGATCCTACGAAGA
LOC_Os07g41540
OsAffx.16676.1.S1_at--56--2271Chr07:24900483..24900507 (25 bp)
AAATCACGGAATTCATCGGCCAGCC
LOC_Os07g41540
OsAffx.16676.1.S1_at--557--5931Chr07:24900422..24900446 (25 bp)
GAGCATCATCGAGCTTTGCAGTTTT
LOC_Os07g41540
OsAffx.16676.1.S1_at--736--8991Chr07:24900390..24900414 (25 bp)
TGAAGGCTTCGGGTGCCAACAGCAC
LOC_Os07g41540
OsAffx.16676.1.S1_at--595--1491Chr07:24900370..24900394 (25 bp)
AGCACAGGCTCCCTACATATGATGG
LOC_Os07g41540
OsAffx.16676.1.S1_at--363--6991Chr07:24900338..24900362 (25 bp)
GTACCCACATGAGTCTTTCTTTAGG
LOC_Os07g41540
OsAffx.16676.1.S1_at--1138--1151Chr07:24900262..24900286 (25 bp)
AGTCTTGATAAGTTTCTCTCGGCCA
LOC_Os07g41540
Target Sequence 
GGCTAAGACCTCATCATTATCTGATGATCAGTGGGAGTCCATCACCATGTCATTATCTGATGTGTGGGAGTCCATCCGTG
AGGGTGCATACTTGGGAGGCCCAATCTGGGAGCATATCCTTGGGTATTGGAACACGAGTAAGGCAAAGCCGGACAAGGTG
CTATTCCTAAAGTACGAGGAGGTTCTACGCGATCCTACGAAGAACATCGAGAAAATCACGGAATTCATCGGCCAGCCATT
CTCTGACGCCGAGAAGGAAGCCGGGATCGTTGAGAGCATCATCGAGCTTTGCAGTTTTGAGAAGATGAAGGCTTCGGGTG
CCAACAGCACAGGCTCCCTACATATGATGGCCAATGAGTACCCACATGAGTCTTTCTTTAGGAAGGGAGTCATCGGAGAT
TGGGTGAACCACGTCACGCCAGAGATGGCCGATAGTCTTGATAAGTTTCTCTCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis