Browse Element(s) Details


OsAffx.16682.1.S1_at

Description tigr:9635.m04228
TID=OsAffx.16682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4222011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42180Os.23210.1.S1_at11/117+25238070..25246771PAUSED, putative, expressed
LOC_Os07g42190OsAffx.5606.1.S1_at11/117+25249332..25251771hypothetical protein
LOC_Os07g42200Os.53190.1.S1_at11/117+25253371..25258266Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os07g42210Os.35344.18.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210Os.35344.3.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_at7/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_x_at5/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42220OsAffx.16682.1.S1_at11/117+25271689..25272287expressed protein
LOC_Os07g42234NANA7+25273996..25279369retrotransposon protein, putative, unclassified
LOC_Os07g42250Os.6411.2.S1_at11/117+25285846..25288436Strictosidine synthase family protein, expressed
LOC_Os07g42260Os.6411.1.S1_a_at11/117+25287562..25292046Proteasome subunit alpha type 6, putative, expressed
LOC_Os07g42270NANA7+25293079..25293903hypothetical protein
LOC_Os07g42280Os.4972.1.S1_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280OsAffx.5607.1.S1_x_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280Os.36147.1.S1_at1/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16682.1.S1_at--884--971Chr07:25272192..25272216 (25 bp)
AGGAGACTAGTAGCTTGGAGTCTGA
LOC_Os07g42220
OsAffx.16682.1.S1_at--560--3691Chr07:25272186..25272210 (25 bp)
CTAGTAGCTTGGAGTCTGAAGGTTC
LOC_Os07g42220
OsAffx.16682.1.S1_at--845--4931Chr07:25272180..25272204 (25 bp)
GCTTGGAGTCTGAAGGTTCCAGCCA
LOC_Os07g42220
OsAffx.16682.1.S1_at--846--8031Chr07:25272176..25272200 (25 bp)
GGAGTCTGAAGGTTCCAGCCATGGA
LOC_Os07g42220
OsAffx.16682.1.S1_at--197--7171Chr07:25272173..25272197 (25 bp)
GTCTGAAGGTTCCAGCCATGGAGCT
LOC_Os07g42220
OsAffx.16682.1.S1_at--1111--3831Chr07:25272171..25272195 (25 bp)
CTGAAGGTTCCAGCCATGGAGCTGG
LOC_Os07g42220
OsAffx.16682.1.S1_at--261--9951Chr07:25272042..25272066 (25 bp)
TACGAGGGCCGCTGGATCTGCGGGC
LOC_Os07g42220
OsAffx.16682.1.S1_at--1022--4491Chr07:25271815..25271839 (25 bp)
GCCGAGGAAGGTTCGCTCCACGCCA
LOC_Os07g42220
OsAffx.16682.1.S1_at--46--8211Chr07:25271810..25271834 (25 bp)
GGAAGGTTCGCTCCACGCCAAGCAG
LOC_Os07g42220
OsAffx.16682.1.S1_at--135--4391Chr07:25271793..25271817 (25 bp)
CCAAGCAGCCCGAGGCGCGATGTGC
LOC_Os07g42220
OsAffx.16682.1.S1_at--468--3531Chr07:25271752..25271776 (25 bp)
CATCGTCTCCGTCGATACCGGCGGC
LOC_Os07g42220
Target Sequence 
AGGAGACTAGTAGCTTGGAGTCTGAAGGTTCCAGCCATGGAGCTGGAGGTTGGGGAGGAGACGGAGGAGGTGGGGGTGGA
GGTGGCGTGCGAGTGCTGCGGGCTCACGGAGGAGTGCACGGCGCCGTACATCGCCGGCGTGCGGGCGCGGTACGAGGGCC
GCTGGATCTGCGGGCTGTGCGGGGACGCCGTCGGGGAGGAGCTGGGGCGGGCCTCGCCGCCGATCTCGCCGGCGGAGGCG
CTCGACCGCCACGCCTTCGTCTGCGGCGCCGGGCGCCGCTCCACCGCGCCGCCGTCGCCCGCCGAGAGCGCGGACGACCT
CATCTCCGCGCTGCGCCACCTCCTCCGCCGCAGGCTGGGCTCCCCGCCGCTGCCGCCGCCGAGGAAGGTTCGCTCCACGC
CAAGCAGCCCGAGGCGCGATGTGCCGACCTCCGCCACCGCCATCGTCTCCGTCGATACCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis