Browse Element(s) Details


OsAffx.16728.1.S1_at

Description tigr:9635.m04618
TID=OsAffx.16728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4595011/11hypothetical protein
LOC_Os07g455403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45900Os.10827.1.S1_x_at9/117+27388989..27394733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45900Os.46055.2.S1_x_at3/117+27388989..27394733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45910OsAffx.28921.1.S1_at11/117+27397589..27398884hypothetical protein
LOC_Os07g45920OsAffx.19600.2.S1_s_at6/117+27400884..27405288transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45930NANA7+27410113..27410667transposon protein, putative, unclassified
LOC_Os07g45940NANA7+27411576..27417479retrotransposon protein, putative, unclassified
LOC_Os07g45950OsAffx.16728.1.S1_at11/117+27419403..27421947hypothetical protein
LOC_Os07g45960OsAffx.1527.2.A1_at11/117+27423161..27424376hypothetical protein
LOC_Os07g45970NANA7+27426741..27436979retrotransposon protein, putative, unclassified, expressed
LOC_Os07g45980OsAffx.16729.1.S1_at11/117+27438628..27439017hypothetical protein
LOC_Os07g45990NANA7+27440575..27445883retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16728.1.S1_at--174--3631Chr07:27420853..27420877 (25 bp)
CTTGTTAAGAAATCTCGGAGTGATC
LOC_Os07g45950
OsAffx.16728.1.S1_at--326--9551Chr07:27420876..27420900 (25 bp)
TCTTAGGAGACAACAGCAGTGATCA
LOC_Os07g45950
OsAffx.16728.1.S1_at--568--5551Chr07:27420933..27420957 (25 bp)
GAAACCTTGCTATTGATCGTGACAC
LOC_Os07g45950
OsAffx.16728.1.S1_at--819--71Chr07:27421579..27421603 (25 bp)
ATTCCTAAAGAATTTGTCCAAGAGC
LOC_Os07g45950
OsAffx.16728.1.S1_at--1076--5351Chr07:27421635..27421659 (25 bp)
GAAGAGACTAGTTGACACACTGAAT
LOC_Os07g45950
OsAffx.16728.1.S1_at--468--10092Chr07:27421665..27421689 (25 bp)
TATGAACCCAGGTGGTCATTGTTCT
LOC_Os07g45950
OsAffx.16728.1.S1_at--653--7732Chr07:27421675..27421699 (25 bp)
GGTGGTCATTGTTCTGGAATCAGGA
LOC_Os07g45950
OsAffx.16728.1.S1_at--825--8872Chr07:27421775..27421799 (25 bp)
TGATGGAAGCACTATCGATGGTAGA
LOC_Os07g45950
OsAffx.16728.1.S1_at--279--2872Chr07:27421812..27421836 (25 bp)
AAGGGCTGAGAACTATAGGATTTTC
LOC_Os07g45950
OsAffx.16728.1.S1_at--846--7751Chr07:27421840..27421864 (25 bp)
GGTGACGTGGGTTTCATGGAATACA
LOC_Os07g45950
OsAffx.16728.1.S1_at--1160--3491Chr07:27421854..27421878 (25 bp)
CATGGAATACAGTACACCTCTCATT
LOC_Os07g45950
Target Sequence 
CTTGTTAAGAAATCTCGGAGTGATCTTAGGAGACAACAGCAGTGATCAAGAATTAAGTAAGCTTGTGGCAGGAATCCTCA
GAAACCTTGCTATTGATCGTGACACAAGGCAGGAGATTGGGCACATGCAGGTGTTGGAAAGAATAATGAATGTAGAAGGG
GCAGAACTAGAGATCCTCATTGGCCTATGTTCACATATATGCAAAGTCATTCCTAAAGAATTTGTCCAAGAGCTGGAGGG
TGGACAGATTAAGAAAAGATTTATGAAGAGACTAGTTGACACACTGAATGCAAATATGAACCCAGGTGGTCATTGTTCTG
GAATCAGGAGGGTGATAATTGAGCAATCCATATACATGATGGAGTGCAATTCTCACTATGCCAATTGCTTCAATGAATTA
CAGATGATGGAAGCACTATCGATGGTAGAAGAGATGCCCTCAAGGGCTGAGAACTATAGGATTTTCTTGGGTGACGTGGG
TTTCATGGAATACAGTACACCTCTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis