Browse Element(s) Details


OsAffx.16734.1.S1_at

Description tigr:9635.m04677
TID=OsAffx.16734.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4653011/11hypothetical protein
LOC_Os03g447601/11meiosis protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein
LOC_Os07g46520OsAffx.28932.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_x_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed
LOC_Os07g46570Os.37097.1.S1_at11/117+27812440..27813522Glutaredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007065biological_processmale meiosis sister chromatid cohesion
GO:0007066biological_processfemale meiosis sister chromatid cohesion
GO:0007131biological_processmeiotic recombination
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16734.1.S1_at--686--4011Chr07:27789009..27789033 (25 bp)
CGTCGCGGCTGAATTTCGTGATCAA
LOC_Os07g46530
OsAffx.16734.1.S1_at--765--671Chr07:27789053..27789077 (25 bp)
ATGACATGTGGATGTGAGCAACCCA
LOC_Os07g46530
OsAffx.16734.1.S1_at--468--5951Chr07:27789068..27789092 (25 bp)
GAGCAACCCAGATTCGAGGCAGACA
LOC_Os07g46530
OsAffx.16734.1.S1_at--101--2571Chr07:27789104..27789128 (25 bp)
AACTGGATTGCACAAGTGGCGCAAC
LOC_Os07g46530
OsAffx.16734.1.S1_at--963--5111Chr07:27789113..27789137 (25 bp)
GCACAAGTGGCGCAACATGCCTTTG
LOC_Os07g46530
OsAffx.16734.1.S1_at--935--571Chr07:27789129..27789153 (25 bp)
ATGCCTTTGCCTTGTCCCTGGACAA
LOC_Os07g46530
OsAffx.16734.1.S1_at--700--2591Chr07:27789152..27789176 (25 bp)
AACGCAAATGAGCTGCTGCCTGTTG
LOC_Os07g46530
OsAffx.16734.1.S1_at--252--9112Chr07:27789165..27789189 (25 bp)
TGCTGCCTGTTGCTTTGTTAAGTGA
LOC_Os07g46530
OsAffx.16734.1.S1_at--1093--9071Chr07:27789175..27789199 (25 bp)
TGCTTTGTTAAGTGAGGCCATGGAT
LOC_Os07g46530
OsAffx.16734.1.S1_at--1023--3491Chr07:27789193..27789217 (25 bp)
CATGGATGATTTAGCCTGGGCTTTC
LOC_Os07g46530
OsAffx.16734.1.S1_at--771--4531Chr07:27789222..27789246 (25 bp)
GCCCCAGCTCTCCAATAAGCATATG
LOC_Os07g46530
Target Sequence 
CGTCGCGGCTGAATTTCGTGATCAAATTCTTTGAGGAGAAATGGATGACATGTGGATGTGAGCAACCCAGATTCGAGGCA
GACAGCGAAAAAAAGAACTGGATTGCACAAGTGGCGCAACATGCCTTTGCCTTGTCCCTGGACAACGCAAATGAGCTGCT
GCCTGTTGCTTTGTTAAGTGAGGCCATGGATGATTTAGCCTGGGCTTTCCAGGGCCCCAGCTCTCCAATAAGCATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis