Browse Element(s) Details


OsAffx.16780.1.S1_at

Description tigr:9636.m00072
TID=OsAffx.16780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0173011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01700OsAffx.5676.1.S1_at11/118+413088..413999Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g01710OsAffx.28981.1.S1_at11/118+428885..430687glycolipid transfer protein, putative
LOC_Os08g01720NANA8+433131..433424hypothetical protein
LOC_Os08g01730OsAffx.16780.1.S1_at11/118+434401..435121hypothetical protein
LOC_Os08g01740Os.6020.1.S1_at11/118+439196..444042VHS domain containing protein, expressed
LOC_Os08g01750Os.8086.1.S1_at11/118+444796..451880phosphoinositide phosphatase family protein, putative, expressed
LOC_Os08g01760Os.11284.1.S1_at11/118+452186..454961oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g01770Os.11664.1.S1_at10/118+455090..458466Adenylate kinase, chloroplast, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16780.1.S1_at--382--5931Chr08:435035..435059 (25 bp)
GAGCATCCGCGCGACAAAGTTGTGG
LOC_Os08g01730
OsAffx.16780.1.S1_at--42--10831Chr08:435016..435040 (25 bp)
TTGTGGATCTGCGATAGTGGCCATG
LOC_Os08g01730
OsAffx.16780.1.S1_at--991--8471Chr08:434993..435017 (25 bp)
TGGCGGGCACTCGATCAGAGATCTT
LOC_Os08g01730
OsAffx.16780.1.S1_at--636--8431Chr08:434939..434963 (25 bp)
GGCCTACTCCTCTAACGACATGTGG
LOC_Os08g01730
OsAffx.16780.1.S1_at--848--651Chr08:434908..434932 (25 bp)
ATGAAGATGCAGATGGCCCCACCCG
LOC_Os08g01730
OsAffx.16780.1.S1_at--451--4191Chr08:434887..434911 (25 bp)
CCCGTGGACTCCTTGAACATGAAGC
LOC_Os08g01730
OsAffx.16780.1.S1_at--666--1531Chr08:434818..434842 (25 bp)
AGCAGGTCAACGATGGTGGAATCAA
LOC_Os08g01730
OsAffx.16780.1.S1_at--558--10231Chr08:434791..434815 (25 bp)
TTATGAATGAACACGCGAAGGCTGT
LOC_Os08g01730
OsAffx.16780.1.S1_at--886--7611Chr08:434735..434759 (25 bp)
GGGAAGTCGCCAACTCCTCTCACAT
LOC_Os08g01730
OsAffx.16780.1.S1_at--649--3551Chr08:434691..434715 (25 bp)
CATCGGCCGCTATCCTAGAGAATAT
LOC_Os08g01730
OsAffx.16780.1.S1_at--760--5371Chr08:434652..434676 (25 bp)
GAAGAAAGACTTGCCGCTGACATGT
LOC_Os08g01730
Target Sequence 
GAGCATCCGCGCGACAAAGTTGTGGATCTGCGATAGTGGCCATGGCGGGCACTCGATCAGAGATCTTTTACATAGGGGCG
CAACCATGACAACACTGGCCTACTCCTCTAACGACATGTGGAGGTGGATGAAGATGCAGATGGCCCCACCCGTGGACTCC
TTGAACATGAAGCATGGCAGCTCAGTGGAAGAAGGCGAGCAGGTCAACGATGGTGGAATCAAGGTTATGAATGAACACGC
GAAGGCTGTGGGAGCCCCGGAGAAGATGGGGACGAACGTGGGGAAGTCGCCAACTCCTCTCACATTGGCCTTCGCTCTTC
TCCTCATCGGCCGCTATCCTAGAGAATATGAGGAAGAGAGAAGGAAGAAAGACTTGCCGCTGACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis