Browse Element(s) Details


OsAffx.16791.1.S1_at

Description tigr:9636.m00143
TID=OsAffx.16791.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0243011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed
LOC_Os08g02430OsAffx.16791.1.S1_at11/118+964591..965055hypothetical protein
LOC_Os08g02440Os.52478.1.S1_at11/118+967944..972565leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os08g02450Os.53900.1.S1_at11/118+974865..977756Sodium/hydrogen exchanger family protein, expressed
LOC_Os08g02460Os.25130.1.S1_at10/118+977708..981577expressed protein
LOC_Os08g02470NANA8+988034..993870retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16791.1.S1_at--105--4351Chr08:964680..964704 (25 bp)
CCATGGCCGAAGATGCCACGGTGGC
LOC_Os08g02430
OsAffx.16791.1.S1_at--933--1911Chr08:964697..964721 (25 bp)
ACGGTGGCCGCTATGGGCACGACCT
LOC_Os08g02430
OsAffx.16791.1.S1_at--966--3831Chr08:964759..964783 (25 bp)
CTGCATCTGGCGAGCACGTCGTCAT
LOC_Os08g02430
OsAffx.16791.1.S1_at--309--5951Chr08:964770..964794 (25 bp)
GAGCACGTCGTCATGGGCTGGTGGG
LOC_Os08g02430
OsAffx.16791.1.S1_at--139--9631Chr08:964780..964804 (25 bp)
TCATGGGCTGGTGGGTCAAGACTGG
LOC_Os08g02430
OsAffx.16791.1.S1_at--273--5811Chr08:964884..964908 (25 bp)
GACGCCGCTGTCCATCCGCTTAGGT
LOC_Os08g02430
OsAffx.16791.1.S1_at--413--7271Chr08:964893..964917 (25 bp)
GTCCATCCGCTTAGGTCACTTCGAG
LOC_Os08g02430
OsAffx.16791.1.S1_at--745--4891Chr08:964901..964925 (25 bp)
GCTTAGGTCACTTCGAGCTCCTCCG
LOC_Os08g02430
OsAffx.16791.1.S1_at--896--3031Chr08:964928..964952 (25 bp)
AATCCTCCAGCCTAATCTCCAGTAG
LOC_Os08g02430
OsAffx.16791.1.S1_at--148--1691Chr08:964936..964960 (25 bp)
AGCCTAATCTCCAGTAGCGGCGACA
LOC_Os08g02430
OsAffx.16791.1.S1_at--550--3731Chr08:964939..964963 (25 bp)
CTAATCTCCAGTAGCGGCGACACGC
LOC_Os08g02430
Target Sequence 
CCATGGCCGAAGATGCCACGGTGGCCGCTATGGGCACGACCTCCCTCTCCGACGTCCTGAAGTCCGCCACCACCCGCACC
TGCATCTGGCGAGCACGTCGTCATGGGCTGGTGGGTCAAGACTGGGCGAGAGCAGGAGAAGGGCTCTTTCGCCTTCCTCG
AGCTCAACGACGGCTCCTGCGTCTCCAACCTGCAGGTCCTCGGCGACGCCGCTGTCCATCCGCTTAGGTCACTTCGAGCT
CCTCCGCCAATCCTCCAGCCTAATCTCCAGTAGCGGCGACACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis