Browse Element(s) Details


OsAffx.16811.1.S1_at

Description tigr:9636.m00279
TID=OsAffx.16811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TPR Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0362011/11TPR Domain containing protein
LOC_Os06g436501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03610Os.14929.1.S1_at10/118+1679908..1682459LSD1 zinc finger family protein, expressed
LOC_Os08g03620OsAffx.16811.1.S1_at11/118+1703682..1708669TPR Domain containing protein
LOC_Os08g03620OsAffx.16811.2.S1_at2/118+1703682..1708669TPR Domain containing protein
LOC_Os08g03630Os.52256.1.S1_at11/118+1710152..1713537acyl-activating enzyme 14, putative, expressed
LOC_Os08g03640Os.12290.1.S1_at11/118+1714065..171679560S acidic ribosomal protein P0, putative, expressed
LOC_Os08g03650Os.10429.1.S1_at11/118+1717285..1723595transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g03660OsAffx.22940.2.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.1.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.18.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.3.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.3.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.2.S1_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.31552.2.S1_at1/118+1728231..1735503transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16811.1.S1_at--965--2751Chr08:1705146..1705170 (25 bp)
AAGGTTCCAGTCACTTTGAGGCCAC
LOC_Os08g03620
OsAffx.16811.1.S1_at--139--5711Chr08:1704684..1704708 (25 bp)
GACTAGAGCACTGTGGCTTACCATA
LOC_Os08g03620
OsAffx.16811.1.S1_at--412--4891Chr08:1704669..1704693 (25 bp)
GCTTACCATATACACCACGTTGTTG
LOC_Os08g03620
OsAffx.16811.1.S1_at--288--3351Chr08:1704654..1704678 (25 bp)
CACGTTGTTGTTTGGCACTACTGCT
LOC_Os08g03620
OsAffx.16811.1.S1_at--96--6492Chr06:26265462..26265716 (25 bp)
GATACTGCATGGTTCCTTGTTGAAT
LOC_Os06g43650
OsAffx.16811.1.S1_at--637--3011Chr08:1704507..1704531 (25 bp)
AATGCAAATGCATCCAGCCACTGGG
LOC_Os08g03620
OsAffx.16811.1.S1_at--12--3911Chr08:1704424..1704445 (22 bp)
CTGGGTTGTCTACACACTGGAGTCA
LOC_Os08g03620
OsAffx.16811.1.S1_at--791--91Chr08:1704394..1704418 (25 bp)
ATTCCCCACCACTGAAGCTGAGAGA
LOC_Os08g03620
OsAffx.16811.1.S1_at--853--7771Chr08:1704372..1704392 (21 bp)
GGTGCTAACATGGTGGTGCTGCTCC
LOC_Os08g03620
OsAffx.16811.1.S1_at--206--7011Chr08:1703877..1703901 (25 bp)
GTACTGTTCTACACATCTTGCTTGG
LOC_Os08g03620
OsAffx.16811.1.S1_at--1051--1551Chr08:1703843..1703867 (25 bp)
AGCTACCTTACACCGGGCATGTGAT
LOC_Os08g03620
Target Sequence 
AAGGTTCCAGTCACTTTGAGGCCACCAATCGTTGGCCTAAGAATGCGAGACCATGGAGGCCTCAGAACCGCCTCTGGGTC
TTCCAAGAAATCACAAATGAGATCAACCAAAAACAGACTAGAGCACTGTGGCTTACCATATACACCACGTTGTTGTTTGG
CACTACTGCTTTAGATGATACTGCATGGTTCCTTGTTGAATGTTTTCATCTGTTGGCTGGACATCTGCTGCTCCATGATG
GGCTGCAAGATCTGAGTGTTGCTCCCCCCTCTGGGCAATTTGCAGAAATGGCAATGCAAATGCATCCAGCCACTGGGTTG
TCTACACACTGGAGTCAGGTGGATTCCCCACCACTGAAGCTGAGAGAGGGTGCTAACATGGTGGTGCTGCTCCAAGATCA
GCTGCTACCAATGGCCTTCTCCATTGCAAATGTTTGTGAAGACTGTATCATGGCATACATGTCAGCATCAGCAAGCAGTG
TACTGTTCTACACATCTTGCTTGGATATGCAGCAGCTACCTTACACCGGGCATGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis