Browse Element(s) Details


OsAffx.16824.1.S1_at

Description tigr:9636.m00365
TID=OsAffx.16824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine-specific protein kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0442011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04360OsAffx.29025.1.S1_at11/118+2131189..2131737Plastocyanin-like domain containing protein, expressed
LOC_Os08g04370OsAffx.29026.1.S1_at11/118+2134038..2134610Plastocyanin-like domain containing protein
LOC_Os08g04390Os.18333.1.S1_at11/118+2140185..2145182bHLH transcription factor, putative, expressed
LOC_Os08g04400NANA8+2148255..2150812pentatricopeptide, putative, expressed
LOC_Os08g04410Os.50227.1.S1_at8/118+2151485..2152488hypothetical protein
LOC_Os08g04420OsAffx.16824.1.S1_at11/118+2153170..2156451Protein kinase domain containing protein, expressed
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16824.1.S1_at--384--2591Chr08:2153651..2153675 (25 bp)
AACGACATGGCTGCTGTGGCCTACA
LOC_Os08g04420
OsAffx.16824.1.S1_at--994--2131Chr08:2153629..2153653 (25 bp)
ACAGATGCGTAAGCCGAGTTTCCCG
LOC_Os08g04420
OsAffx.16824.1.S1_at--365--5171Chr08:2153605..2153629 (25 bp)
GCAAGCGCCCAGCAATGAGAGATGT
LOC_Os08g04420
OsAffx.16824.1.S1_at--231--4351Chr08:2153577..2153601 (25 bp)
CCAGGCTCTGATCCGTGTGGCGAAA
LOC_Os08g04420
OsAffx.16824.1.S1_at--1077--2291Chr08:2153527..2153551 (25 bp)
AAAGGAGGCCTCCACCAGGTAGAGC
LOC_Os08g04420
OsAffx.16824.1.S1_at--347--5251Chr08:2153495..2153519 (25 bp)
GAATCTGTCGACTTGGAAGCATCCG
LOC_Os08g04420
OsAffx.16824.1.S1_at--573--2711Chr08:2153479..2153503 (25 bp)
AAGCATCCGAGGTTCAATCTTCGCT
LOC_Os08g04420
OsAffx.16824.1.S1_at--537--6111Chr08:2153424..2153448 (25 bp)
GAGTGTCTCTGATCTTGCAGATGTC
LOC_Os08g04420
OsAffx.16824.1.S1_at--244--2511Chr08:2153380..2153404 (25 bp)
AACATTTTCGGCTGTTCTTGTTCTT
LOC_Os08g04420
OsAffx.16824.1.S1_at--569--6731Chr08:2153361..2153385 (25 bp)
GTTCTTGGCACTTTCTTCTTTTTTG
LOC_Os08g04420
OsAffx.16824.1.S1_at--584--7471Chr08:2153204..2153228 (25 bp)
GTGTGATGTATAGACCTGCTTTGTA
LOC_Os08g04420
Target Sequence 
AACGACATGGCTGCTGTGGCCTACAGATGCGTAAGCCGAGTTTCCCGCAAGCGCCCAGCAATGAGAGATGTTGTCCAGGC
TCTGATCCGTGTGGCGAAACACAGCCAGAGCAAGAAGCATCACAAAAGGAGGCCTCCACCAGGTAGAGCAGACGATGAAT
CTGTCGACTTGGAAGCATCCGAGGTTCAATCTTCGCTCTCCGGCCATCAGAGACAAGAATCAGTTGGGAGTGTCTCTGAT
CTTGCAGATGTCTGACTGAAATTGACAACACAACATTTTCGGCTGTTCTTGTTCTTGGCACTTTCTTCTTTTTTGTCTGT
GCAATTCTTTTGTTTTGTTGATATTAAAAATACTAGGATCAAGGATGACACAATTGGATAGAGAGAATGCAGTTTTGAGC
ATTAGTGGTGACTGGTAACTGGTGTATGGAGAGATGACAATTTGTAAGTGTGATGTATAGACCTGCTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis