Browse Element(s) Details


OsAffx.16825.1.S1_s_at

Description tigr:9636.m00366
TID=OsAffx.16825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0443010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04390Os.18333.1.S1_at11/118+2140185..2145182bHLH transcription factor, putative, expressed
LOC_Os08g04400NANA8+2148255..2150812pentatricopeptide, putative, expressed
LOC_Os08g04410Os.50227.1.S1_at8/118+2151485..2152488hypothetical protein
LOC_Os08g04420OsAffx.16824.1.S1_at11/118+2153170..2156451Protein kinase domain containing protein, expressed
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16825.1.S1_s_at--694--1091Chr08:2164676..2164700 (25 bp)
AGTGGCGCCCCTCGCTCGGTGACAT
LOC_Os08g04430
OsAffx.16825.1.S1_s_at--595--3971Chr08:2164660..2164684 (25 bp)
CGGTGACATCTACGAGGAGTACAGC
LOC_Os08g04430
OsAffx.16825.1.S1_s_at--524--4591NONE
GCGCACACAGCGATGAATACAGGCA
NONE
OsAffx.16825.1.S1_s_at--667--3931Chr08:2164355..2164379 (25 bp)
CGGCGTTCCTCTTCTGAACGCGGCG
LOC_Os08g04430
OsAffx.16825.1.S1_s_at--1119--5871Chr08:2164297..2164321 (25 bp)
GAGCGACGGCGAACTGTATCAAACA
LOC_Os08g04430
OsAffx.16825.1.S1_s_at--570--5691Chr08:2164264..2164288 (25 bp)
GACTATTATTTTCTACTTACTGCAG
LOC_Os08g04430
OsAffx.16825.1.S1_s_at--201--10211Chr08:2164258..2164282 (25 bp)
TATTTTCTACTTACTGCAGGACTAA
LOC_Os08g04430
OsAffx.16825.1.S1_s_at--430--10471Chr08:2164248..2164272 (25 bp)
TTACTGCAGGACTAAGGATTTATAT
LOC_Os08g04430
OsAffx.16825.1.S1_s_at--934--6411Chr08:2164196..2164220 (25 bp)
GATCTCTAGCTACTTGTATGTAATT
LOC_Os08g04430
OsAffx.16825.1.S1_s_at--334--3191Chr08:2164145..2164169 (25 bp)
CAATATGGAATTGCATCTGTTGTAT
LOC_Os08g04430
OsAffx.16825.1.S1_s_at--1159--6871Chr08:2164115..2164139 (25 bp)
GTATATACGTCATAATTAACATCAC
LOC_Os08g04430
Target Sequence 
AGTGGCGCCCCTCGCTCGGTGACATCTACGAGGAGTACAGCGCCGCCGGCGCCGCCGACGCCGCAGCAGCCAAGCTCCGC
CGCCCCGCCGCCGCCAGAGCCGGCCGGTCCGCCGCCCGCGACGCCGCCAGGGTTCTCCCCCGCGCACACAGCGATGAATA
CAGGCACATCGAGACGGCGGTGTCCATGCCGGCGTTTGCGCCGGCGGCGTTCCTCTTCTGAACGCGGCGGCGTCGGGTGG
CCGGCGATGATGACGAAAAGTAGAGCGACGGCGAACTGTATCAAACATATATATAGACTATTATTTTCTACTTACTGCAG
GACTAAGGATTTATATATATGAATCCAGGAAATAATGGTGATCGATCTCTAGCTACTTGTATGTAATTAATATACTTGTG
TGTGTTGAAAGATACAATATGGAATTGCATCTGTTGTATATAGTGTATATACGTCATAATTAACATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16825.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis