Browse Element(s) Details


OsAffx.16834.1.S1_at

Description tigr:9636.m00433
TID=OsAffx.16834.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0505011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05010NANA8+2560311..2561892retrotransposon protein, putative, LINE subclass
LOC_Os08g05020NANA8+2567776..2568576expressed protein
LOC_Os08g05030OsAffx.16833.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030Os.50803.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030OsAffx.16833.1.S1_x_at9/118+2570243..2575403expressed protein
LOC_Os08g05040OsAffx.29038.1.S1_at11/118+2578493..2579379hypothetical protein
LOC_Os08g05040Os.23271.2.A1_x_at1/118+2578493..2579379hypothetical protein
LOC_Os08g05050OsAffx.16834.1.S1_at11/118+2586317..2586592hypothetical protein
LOC_Os08g05060OsAffx.11392.2.S1_x_at6/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.3.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.25352.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.20408.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.5.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05070OsAffx.5709.1.S1_at10/118+2600123..2603166hypothetical protein
LOC_Os08g05070Os.46444.1.S1_x_at1/118+2600123..2603166hypothetical protein
LOC_Os08g05080OsAffx.5710.1.S1_at11/118+2604863..2606136hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16834.1.S1_at--628--10551Chr08:2586410..2586434 (25 bp)
TTCGGGAAAGTGGAGGCCGCTCTTC
LOC_Os08g05050
OsAffx.16834.1.S1_at--966--9571Chr08:2586438..2586462 (25 bp)
TCTTCGCTGCGGTCCCACTGGTGAT
LOC_Os08g05050
OsAffx.16834.1.S1_at--684--3831Chr08:2586444..2586468 (25 bp)
CTGCGGTCCCACTGGTGATGACGGC
LOC_Os08g05050
OsAffx.16834.1.S1_at--203--7251Chr08:2586449..2586473 (25 bp)
GTCCCACTGGTGATGACGGCGCTGA
LOC_Os08g05050
OsAffx.16834.1.S1_at--37--4371Chr08:2586452..2586476 (25 bp)
CCACTGGTGATGACGGCGCTGACAG
LOC_Os08g05050
OsAffx.16834.1.S1_at--659--6231Chr08:2586479..2586503 (25 bp)
GATGGCGGAGTCGACGCCTACAGCC
LOC_Os08g05050
OsAffx.16834.1.S1_at--454--1151Chr08:2586487..2586511 (25 bp)
AGTCGACGCCTACAGCCGGCTGGAA
LOC_Os08g05050
OsAffx.16834.1.S1_at--257--9871Chr08:2586497..2586521 (25 bp)
TACAGCCGGCTGGAACTGCTACCGG
LOC_Os08g05050
OsAffx.16834.1.S1_at--373--4711Chr08:2586505..2586529 (25 bp)
GCTGGAACTGCTACCGGCGACGGAA
LOC_Os08g05050
OsAffx.16834.1.S1_at--377--3911Chr08:2586506..2586530 (25 bp)
CTGGAACTGCTACCGGCGACGGAAA
LOC_Os08g05050
OsAffx.16834.1.S1_at--937--4071Chr08:2586522..2586546 (25 bp)
CGACGGAAAGAGAACGCACTCGCGG
LOC_Os08g05050
Target Sequence 
TTCGGGAAAGTGGAGGCCGCTCTTCCTCTCTTCGCTGCGGTCCCACTGGTGATGACGGCGCTGACAGGAGATGGCGGAGT
CGACGCCTACAGCCGGCTGGAACTGCTACCGGCGACGGAAAGAGAACGCACTCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis