Browse Element(s) Details


OsAffx.16882.1.S1_at

Description tigr:9636.m00709
TID=OsAffx.16882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0768011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07610Os.41248.4.S1_x_at2/118+4263872..4268637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g07620OsAffx.5738.1.S1_at11/118+4272015..4272344hypothetical protein
LOC_Os08g07630OsAffx.29084.2.S1_x_at11/118+4277482..4277988expressed protein
LOC_Os08g07640NANA8+4280063..4280476hypothetical protein
LOC_Os08g07650OsAffx.29085.1.S1_at11/118+4282901..4283271hypothetical protein
LOC_Os08g07660OsAffx.29084.2.S1_x_at1/118+4284192..4284740hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07670OsAffx.16881.1.S1_x_at11/118+4287651..4288169hypothetical protein
LOC_Os08g07680OsAffx.16882.1.S1_at11/118+4290881..4291393hypothetical protein
LOC_Os08g07690Os.51406.1.S1_at9/118+4294380..4295067expressed protein
LOC_Os08g07700OsAffx.5740.1.S1_at11/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07700OsAffx.14566.1.S1_at1/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07710OsAffx.29086.1.S1_at11/118+4305440..4305727hypothetical protein
LOC_Os08g07720OsAffx.29087.1.S1_x_at11/118+4309816..4312201Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16882.1.S1_at--629--1451Chr08:4290912..4290936 (25 bp)
AGAAGAGCAGCGCTAGCGGCGGCCT
LOC_Os08g07680
OsAffx.16882.1.S1_at--1056--4271Chr08:4290934..4290958 (25 bp)
CCTGCACGGCGAAGAGCAGGTCGAT
LOC_Os08g07680
OsAffx.16882.1.S1_at--218--9391Chr08:4290954..4290978 (25 bp)
TCGATGGCGGACATGTCGTCACGGC
LOC_Os08g07680
OsAffx.16882.1.S1_at--238--4151Chr08:4291011..4291035 (25 bp)
CGCGGCAGCCGCAGAGCATTCTCAT
LOC_Os08g07680
OsAffx.16882.1.S1_at--375--1351Chr08:4291023..4291047 (25 bp)
AGAGCATTCTCATCCGTGCCTTCGC
LOC_Os08g07680
OsAffx.16882.1.S1_at--779--1791Chr08:4291130..4291154 (25 bp)
ACCGCGGCCGTCACTGATACTACTT
LOC_Os08g07680
OsAffx.16882.1.S1_at--1081--411Chr08:4291182..4291206 (25 bp)
ATCATCTTCAACACGAGGCAGACGG
LOC_Os08g07680
OsAffx.16882.1.S1_at--439--3271Chr08:4291190..4291214 (25 bp)
CAACACGAGGCAGACGGAGGCAGCA
LOC_Os08g07680
OsAffx.16882.1.S1_at--567--8011Chr08:4291205..4291229 (25 bp)
GGAGGCAGCAAACATGTTGTAACCG
LOC_Os08g07680
OsAffx.16882.1.S1_at--983--5131Chr08:4291212..4291305 (25 bp)
GCAAACATGTTGTAACCGGTTTCAA
LOC_Os08g07680
OsAffx.16882.1.S1_at--998--3071Chr08:4291312..4291336 (25 bp)
AATTAGATTTTATGCCGGGGATGAC
LOC_Os08g07680
Target Sequence 
AGAAGAGCAGCGCTAGCGGCGGCCTGCACGGCGAAGAGCAGGTCGATGGCGGACATGTCGTCACGGCGGAGACGGAGATG
GCGGCGGCGGCTGCACCGTCGCGGCAGCCGCAGAGCATTCTCATCCGTGCCTTCGCCGGCTGCCTGCTCGCGCTGTGTGG
CGGCGGCGGCGGCGATCCCTCCGATCCGCCGCCGCTGCGTCCACGGCCACACGGCGCCACCGCGGCCGTCACTGATACTA
CTTCTGCCGCCGCCGCCGCCGCCGCCGCTCATCATCTTCAACACGAGGCAGACGGAGGCAGCAAACATGTTGTAACCGGT
TTCAATTTGGAAATTAGATTTTATGCCGGGGATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis