Browse Element(s) Details


OsAffx.16932.1.S1_at

Description tigr:9636.m00967
TID=OsAffx.16932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NAC domain protein NAC1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1008011/11NAC-domain containing protein 21/22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10040Os.47130.4.A1_x_at1/118+5816922..5817254retrotransposon protein, putative, unclassified
LOC_Os08g10050OsAffx.20027.1.S1_at1/118+5819517..5822461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10060NANA8+5822778..5828876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10070Os.27059.1.S1_at11/118+5833956..5837579Protein kinase domain containing protein, expressed
LOC_Os08g10080Os.26957.1.A1_a_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10080OsAffx.16932.1.S1_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10090OsAffx.29128.1.S1_at11/118+5852056..5853214hypothetical protein
LOC_Os08g10100NANA8+5858945..5859496hypothetical protein
LOC_Os08g10110OsAffx.29130.1.S1_at8/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.20929.1.S1_at2/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.1472.1.S1_at1/118+5861115..5862621hypothetical protein
LOC_Os08g10120NANA8+5863499..5867247retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009734biological_processauxin mediated signaling pathway
GO:0010014biological_processmeristem initiation
GO:0010199biological_processorgan boundary specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16932.1.S1_at--151--10231Chr08:5842621..5842645 (25 bp)
TTTGTTGTTGTTCTTCGTTCGGATT
LOC_Os08g10080
OsAffx.16932.1.S1_at--687--10551Chr08:5842611..5842635 (25 bp)
TTCTTCGTTCGGATTGCGTGGATCC
LOC_Os08g10080
OsAffx.16932.1.S1_at--438--7931Chr08:5842601..5842625 (25 bp)
GGATTGCGTGGATCCGACAAGATCA
LOC_Os08g10080
OsAffx.16932.1.S1_at--230--5611Chr08:5842586..5842610 (25 bp)
GACAAGATCAGAGCACGCCGTTTTC
LOC_Os08g10080
OsAffx.16932.1.S1_at--614--3411Chr08:5842578..5842602 (25 bp)
CAGAGCACGCCGTTTTCGTGTTCAT
LOC_Os08g10080
OsAffx.16932.1.S1_at--323--6811Chr08:5842567..5842591 (25 bp)
GTTTTCGTGTTCATGTTCGGAGGAA
LOC_Os08g10080
OsAffx.16932.1.S1_at--286--6292Chr04:25912975..25913012 (24 bp)
GATGATGCTGAGTTTTATTAAAATG
NONE
OsAffx.16932.1.S1_at--607--2331Chr08:5842458..5842482 (25 bp)
AAAGATTGGTTGCTGTTTGCTACAG
LOC_Os08g10080
OsAffx.16932.1.S1_at--513--7911Chr08:5842451..5842475 (25 bp)
GGTTGCTGTTTGCTACAGTTAGAAT
LOC_Os08g10080
OsAffx.16932.1.S1_at--296--10031Chr08:5842432..5842456 (25 bp)
TAGAATACCTGTCAAAGAACTCACT
LOC_Os08g10080
OsAffx.16932.1.S1_at--130--10251Chr08:5842309..5842333 (25 bp)
TTTGTTTTCACACACTATCATGAAT
LOC_Os08g10080
Target Sequence 
TTTGTTGTTGTTCTTCGTTCGGATTGCGTGGATCCGACAAGATCAGAGCACGCCGTTTTCGTGTTCATGTTCGGAGGAAG
AAGATTGATGCTGAGTTTTCTTTTTTTTTTCTGAAGAAAAAAAGATGATGCTGAGTTTTATTAAAATGATAGGGGCGAAA
TGAAAAGATTGGTTGCTGTTTGCTACAGTTAGAATACCTGTCAAAGAACTCACTGTCAGATTATACATGTTCAGAAAGCT
CTGTTACAAATAGGGGGGAAAAATCAGCTTTTAGGGAAAAAAAATGATGCTGAGTTTCTTTTCTTTTTCTGTTTTGTTTT
CACACACTATCATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis