Browse Element(s) Details


OsAffx.16942.1.S1_at

Description tigr:9636.m01051
TID=OsAffx.16942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1086011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10810NANA8+6359655..6362183hypothetical protein
LOC_Os08g10820OsAffx.16941.1.S1_at11/118+6365310..6365803hypothetical protein
LOC_Os08g10830Os.53142.1.S1_at1/118+6368348..6371095retrotransposon protein, putative, unclassified
LOC_Os08g10840Os.53142.1.S1_at1/118+6376325..6377192transposon protein, putative, unclassified
LOC_Os08g10850OsAffx.5782.1.S1_at10/118+6381444..6384669hypothetical protein
LOC_Os08g10860OsAffx.16942.1.S1_at11/118+6386831..6387838hypothetical protein
LOC_Os08g10870OsAffx.29141.1.S1_at9/118+6393537..6397410hypothetical protein
LOC_Os08g10870OsAffx.14850.1.S1_x_at4/118+6393537..6397410hypothetical protein
LOC_Os08g10870Os.24478.1.S1_at3/118+6393537..6397410hypothetical protein
LOC_Os08g10880OsAffx.29142.1.S1_at11/118+6405533..6406820hypothetical protein
LOC_Os08g10890OsAffx.11259.1.S1_at2/118+6410015..6416679hypothetical protein
LOC_Os08g10890OsAffx.8338.1.S1_x_at1/118+6410015..6416679hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16942.1.S1_at--694--1571Chr08:6386862..6386886 (25 bp)
AGCTCCTGACAGATGACGACCTCGA
LOC_Os08g10860
OsAffx.16942.1.S1_at--180--5971Chr08:6386903..6386927 (25 bp)
GAGAAGCAAACCTACCAGATGTTGA
LOC_Os08g10860
OsAffx.16942.1.S1_at--968--311Chr08:6386956..6386980 (25 bp)
ATACGATCCTGAGCTACTCCGGAAA
LOC_Os08g10860
OsAffx.16942.1.S1_at--228--6271Chr08:6387373..6387397 (25 bp)
GATGTGACCTTAGTATTCTTCCAAC
LOC_Os08g10860
OsAffx.16942.1.S1_at--961--10051Chr08:6387383..6387407 (25 bp)
TAGTATTCTTCCAACCCGGTTGTAG
LOC_Os08g10860
OsAffx.16942.1.S1_at--774--2531Chr08:6387448..6387472 (25 bp)
AACTGTTATGCACTAACCATTCCCC
LOC_Os08g10860
OsAffx.16942.1.S1_at--298--1331Chr08:6387483..6387507 (25 bp)
AGAGGAATCCCGTGCAGGTGCGACA
LOC_Os08g10860
OsAffx.16942.1.S1_at--852--7051Chr08:6387515..6387539 (25 bp)
GTAACCGCAGAATGGCAGCAGATGA
LOC_Os08g10860
OsAffx.16942.1.S1_at--990--971Chr08:6387542..6387566 (25 bp)
AGGAGGATTCAACGTACTCACCACC
LOC_Os08g10860
OsAffx.16942.1.S1_at--834--1711Chr08:6387561..6387585 (25 bp)
ACCACCCGGTCATGCTTATGAGAGT
LOC_Os08g10860
OsAffx.16942.1.S1_at--894--2251Chr08:6387592..6387616 (25 bp)
AAATCAGCTAGAGATGCCTCCGGCT
LOC_Os08g10860
Target Sequence 
AGCTCCTGACAGATGACGACCTCGACCTCGTCGACAGACGAGAGAAGCAAACCTACCAGATGTTGAAGAACCGATCGTTC
GCTCACACCCGAGCATACGATCCTGAGCTACTCCGGAAAACAGTGCAAGGTCATACTTTGAAACATGGAGCAGATGTGAC
CTTAGTATTCTTCCAACCCGGTTGTAGAAATGAAATCCTGTTACCTAACCCGGGGTATCATTTGTATAACTGTTATGCAC
TAACCATTCCCCTGCAGACGATAGAGGAATCCCGTGCAGGTGCGACACATAGGAGTAACCGCAGAATGGCAGCAGATGAA
CAGGAGGATTCAACGTACTCACCACCCGGTCATGCTTATGAGAGTGGCTGGAAATCAGCTAGAGATGCCTCCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis