Browse Element(s) Details


OsAffx.17021.1.S1_at

Description tigr:9636.m01618
TID=OsAffx.17021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1611011/11hypothetical protein
LOC_Os01g450101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16070OsAffx.17020.1.S1_at11/118+9789087..9792238NB-ARC domain containing protein, expressed
LOC_Os08g16080Os.47463.1.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16080Os.14491.2.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16090Os.46053.2.S1_x_at9/118+9803917..9807149transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16100NANA8+9808727..9812059transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16110OsAffx.17021.1.S1_at11/118+9813896..9815277hypothetical protein
LOC_Os08g16110OsAffx.11470.1.S1_at1/118+9813896..9815277hypothetical protein
LOC_Os08g16120Os.11187.1.S1_at11/118+9818284..9822128NB-ARC domain containing protein, expressed
LOC_Os08g16130Os.52672.1.S1_at11/118+9824663..9827704fiber protein Fb34, putative, expressed
LOC_Os08g16140OsAffx.22421.2.S1_at3/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16140OsAffx.22421.4.S1_x_at2/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16140OsAffx.22421.1.S1_at2/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16140OsAffx.16244.1.S1_x_at1/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16140Os.26886.3.S1_x_at1/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16150NANA8+9839362..9839744hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17021.1.S1_at--506--911Chr08:9815178..9815202 (25 bp)
AGGCTGACAACACCAGATCTGGAGA
LOC_Os08g16110
OsAffx.17021.1.S1_at--382--6413Chr01:25866386..25866407 (22 bp)
GATCTGGAGATACCTAGGGCCTCCC
LOC_Os01g45010
OsAffx.17021.1.S1_at--320--8551Chr08:9815132..9815156 (25 bp)
TGGATCAGCCTAAGCCATGCAGTGA
LOC_Os08g16110
OsAffx.17021.1.S1_at--509--1051Chr08:9815105..9815129 (25 bp)
AGGTGATGGATCGTACCGGTCCCTG
LOC_Os08g16110
OsAffx.17021.1.S1_at--742--6351Chr08:9815047..9815071 (25 bp)
GATGCCGATTGATGCGAATCCTCCT
LOC_Os08g16110
OsAffx.17021.1.S1_at--923--7411Chr08:9814944..9814968 (25 bp)
GTGTTGCAGACACCGTGTTGCTCGT
LOC_Os08g16110
OsAffx.17021.1.S1_at--1115--9093Chr03:10388812..10388836 (25 bp)
TGCTCGTCGACGTTGTGCGTAGGTA
NONE
OsAffx.17021.1.S1_at--162--771Chr08:9814902..9814926 (25 bp)
ATGTCGTGCGTGTGGCGTATCACCA
LOC_Os08g16110
OsAffx.17021.1.S1_at--814--853Chr03:10388860..10388883 (24 bp)
ATGGCTCGGCTGGTACCTACAGGTT
NONE
OsAffx.17021.1.S1_at--132--4291Chr08:9814691..9814715 (25 bp)
CCTACAGGTTTCAGGGATGGTACTT
LOC_Os08g16110
OsAffx.17021.1.S1_at--1067--4291Chr08:9814555..9814577 (23 bp)
CCTTCAGGGCTGGTACTTGTGGTAT
LOC_Os08g16110
Target Sequence 
AGGCTGACAACACCAGATCTGGAGATACCTAGGGCCTCCCCGTCATTGGATCAGCCTAAGCCATGCAGTGATGAGGTGAT
GGATCGTACCGGTCCCTGTGGCCTCCACCTCGGTGTCATGCCATCGAGGAGGATGCCGATTGATGCGAATCCTCCTCCCA
TGCAACTGTTAGTGGTGATGGAGGGGAGACAAATGAAGGTGCTAGATTTGGAGTTTCGATTGGCAATCGATGTGGTGTTG
CAGACACCGTGTTGCTCGTCGACGTTGTGCGTAGGTATGTCGTGCGTGTGGCGTATCACCATGGCTCGGCTGGTACCTAC
AGGTTTCAGGGATGGTACTTGTGGTATCATGGTTGATACCTTCAGGGCTGGTACTTGTGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis