Browse Element(s) Details


OsAffx.17050.1.S1_x_at

Description tigr:9636.m01794
TID=OsAffx.17050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Formin Homology 2 Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1782010/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17784Os.23712.2.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17784Os.23712.1.S1_at11/118+10893604..10903284Purple acid phosphatase, putative, expressed
LOC_Os08g17800NANA8+10912318..10912743hypothetical protein
LOC_Os08g17810NANA8+10913705..10914120hypothetical protein
LOC_Os08g17820Os.49894.1.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.11522.2.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820OsAffx.17050.1.S1_x_at10/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.5188.1.S1_at1/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17830OsAffx.17051.1.S1_at11/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830Os.10719.1.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830OsAffx.28164.2.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17850OsAffx.17052.1.S1_at11/118+10943776..10944434hAT family dimerisation domain containing protein
LOC_Os08g17860OsAffx.21756.3.S1_x_at1/118+10945255..10949229transposon protein, putative, Pong sub-class
LOC_Os08g17870OsAffx.17053.1.S1_x_at11/118+10953899..10960966expressed protein
LOC_Os08g17870OsAffx.17053.1.S1_at11/118+10953899..10960966expressed protein
LOC_Os08g17870Os.50996.1.S1_x_at7/118+10953899..10960966expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17050.1.S1_x_at--937--10191NONE
TATTTATCCAAGGTGCTTTCTGAGA
NONE
OsAffx.17050.1.S1_x_at--931--5951Chr08:10924748..10924772 (25 bp)
GAGAAACTTCCAGAACTTCTTGATT
LOC_Os08g17820
OsAffx.17050.1.S1_x_at--72--6531Chr08:10924769..10924793 (25 bp)
GATTTTCCTAAAGATCTCGCTAGCT
LOC_Os08g17820
OsAffx.17050.1.S1_x_at--437--3791Chr08:10924784..10924808 (25 bp)
CTCGCTAGCTTGGAGTTGGCAGCAA
LOC_Os08g17820
OsAffx.17050.1.S1_x_at--77--4551Chr08:10924998..10925022 (25 bp)
GCCCTGTGTCAGAGATATTCCGCAA
LOC_Os08g17820
OsAffx.17050.1.S1_x_at--735--5331Chr08:10925209..10925233 (25 bp)
GAAGTTAGATCCTTGACCTCACTAT
LOC_Os08g17820
OsAffx.17050.1.S1_x_at--753--10391Chr08:10925536..10925560 (25 bp)
TTTTGGAGAAGACCCAGCACGTTGT
LOC_Os08g17820
OsAffx.17050.1.S1_x_at--236--3411Chr08:10925550..10925573 (24 bp)
CAGCACGTTGTCCATTTGAGCAAGT
LOC_Os08g17820
OsAffx.17050.1.S1_x_at--371--8911Chr08:10925566..10925725 (25 bp)
TGAGCAAGTGGTCATTACACTCCAA
LOC_Os08g17820
OsAffx.17050.1.S1_x_at--389--10251Chr08:10925729..10925753 (25 bp)
TTTGTGAGATTGTTCGTACGTTCCC
LOC_Os08g17820
OsAffx.17050.1.S1_x_at--322--10791Chr08:10925738..10925762 (25 bp)
TTGTTCGTACGTTCCCATGATGAGA
LOC_Os08g17820
Target Sequence 
TATTTATCCAAGGTGCTTTCTGAGAAACTTCCAGAACTTCTTGATTTTCCTAAAGATCTCGCTAGCTTGGAGTTGGCAGC
AAAGGTACAATTGAAGTCATTAGCAGAGGAAATGCAGGCCATAAACAAAGGACTCGAAAAAGTCGAGCAAGAACTAACTA
CATCAGAAAATGATGGCCCTGTGTCAGAGATATTCCGCAAGACACTGAAGGATTTTCTAAGTGGTGCTGAAGCTGAAGTT
AGATCCTTGACCTCACTATATTCTAATGTGGGAAGAAATGCTGATGCATTAGCACTTTATTTTGGAGAAGACCCAGCACG
TTGTCCATTTGAGCAAGTGGTCATTACACTCCAAAACTTTGTGAGATTGTTCGTACGTTCCCATGATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17050.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis