Browse Element(s) Details


OsAffx.17053.1.S1_x_at

Description tigr:9636.m01800
TID=OsAffx.17053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Reticulon, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1787011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17820Os.49894.1.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.11522.2.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820OsAffx.17050.1.S1_x_at10/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.5188.1.S1_at1/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17830OsAffx.17051.1.S1_at11/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830Os.10719.1.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830OsAffx.28164.2.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17850OsAffx.17052.1.S1_at11/118+10943776..10944434hAT family dimerisation domain containing protein
LOC_Os08g17860OsAffx.21756.3.S1_x_at1/118+10945255..10949229transposon protein, putative, Pong sub-class
LOC_Os08g17870OsAffx.17053.1.S1_x_at11/118+10953899..10960966expressed protein
LOC_Os08g17870OsAffx.17053.1.S1_at11/118+10953899..10960966expressed protein
LOC_Os08g17870Os.50996.1.S1_x_at7/118+10953899..10960966expressed protein
LOC_Os08g17880OsAffx.17054.1.S1_at11/118+10964219..10965351hypothetical protein
LOC_Os08g17890Os.45173.1.S1_x_at1/118+10969748..10976599retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17900OsAffx.20733.1.A1_x_at1/118+10977364..10978215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17910OsAffx.22699.1.S1_x_at2/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17910OsAffx.20553.1.S1_at1/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17053.1.S1_x_at--246--8151Chr08:10956728..10956811 (25 bp)
GGAAATAGGACCACAGGCATCAAGA
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--205--3571Chr08:10956804..10956828 (25 bp)
CATCAAGAAGTGCTGTTGCTTGTAC
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--413--431Chr08:10956921..10956945 (25 bp)
ATCATTCCGAAGGTGTGCTCATCTT
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--268--1991Chr08:10956946..10956969 (24 bp)
ACTCCACCCAGCTTGCAAGATATGA
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--1043--7951Chr08:10957214..10957238 (25 bp)
GGATCTGGTAACATTGGTCACTGCT
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--1076--10851Chr08:10957227..10957251 (25 bp)
TTGGTCACTGCTTTTACTGGTCCCC
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--947--1131Chr08:10960185..10960209 (25 bp)
AGTCCTGCTCCCACAAGAAGGCGGT
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--773--10511Chr08:10960223..10960247 (25 bp)
TTCACCCTTGTCTGGAACGTCTCAT
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--144--7731Chr08:10960696..10960720 (25 bp)
GGTGGCCATGAAGTGCTACCAGCAG
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--1029--1411Chr08:10960810..10960834 (25 bp)
AGAAACTCCTGCTAGATCAAGCCCG
LOC_Os08g17870
OsAffx.17053.1.S1_x_at--783--3451Chr08:10960905..10960929 (25 bp)
CAGTCTCCGGCGAGTTTGCAAGGGA
LOC_Os08g17870
Target Sequence 
GGAAATAGGACCACAGGCATCAAGAAGTGCTGTTGCTTGTACAGATAAAGTGTTCTTTGGGGTCTTCATCATTCCGAAGG
TGTGCTCATCTTACTCCACCCAGCTTGCAAGATATGAGTTGAGGTTGTTGGATCTGGTAACATTGGTCACTGCTTTTACT
GGTCCCCCGAGGCACTTGGGCATGTGCACGGGGAGGTTTTGGCTGGAGAGGTTCAGGGATGGATGGGAGTCCTGCTCCCA
CAAGAAGGCGGTCGTGGCAGCCGTCTTCACCCTTGTCTGGAACGTCTCATCCACGGTTGCTCGTGTCTGGGCTGTGTTCA
TGCTGGTGGTGGCCATGAAGTGCTACCAGCAGCGGATGATGGAGTACGGCTGGAGCAGCACGGTGGAGGACTCACAGGAG
GCCACCGCCGCCGCCACCGGCGACGATGAGTCACCGCAGGAAGAAACTCCTGCTAGATCAAGCCCGGCCAAGGCGCACGA
CCACGAGCCGGCACAGGGATTTGGGGCGGCGGCGCCGGCGCGGCATCGCCGGACGCCAGTCTCCGGCGAGTTTGCAAGGG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17053.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis