Browse Element(s) Details


OsAffx.17091.1.S1_at

Description tigr:9636.m02031
TID=OsAffx.17091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2064411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20610NANA8+12375372..12377579pentatricopeptide, putative
LOC_Os08g20620OsAffx.17089.1.S1_at10/118+12378206..12380444hypothetical protein
LOC_Os08g20630NANA8+12387438..12387656hypothetical protein
LOC_Os08g20644OsAffx.17091.1.S1_at11/118+12401693..12402157expressed protein
LOC_Os08g20660Os.27359.1.S1_at11/118+12405895..12418726Sucrose-phosphate synthase 1, putative, expressed
LOC_Os08g20670OsAffx.29289.1.S1_at10/118+12420977..12422121hypothetical protein
LOC_Os08g20680Os.11220.1.S1_at11/118+12423980..12424983expressed protein
LOC_Os08g20690OsAffx.5883.1.S1_at10/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_at3/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_x_at2/118+12426836..12429826hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17091.1.S1_at--413--10811Chr08:12401801..12401825 (25 bp)
TTGTCATCGCCAACAGCTGGCCATG
LOC_Os08g20644
OsAffx.17091.1.S1_at--1111--531Chr08:12401796..12401820 (25 bp)
ATCGCCAACAGCTGGCCATGGTGGA
LOC_Os08g20644
OsAffx.17091.1.S1_at--243--4431Chr08:12401782..12401806 (25 bp)
GCCATGGTGGAAACTACTGACACAG
LOC_Os08g20644
OsAffx.17091.1.S1_at--72--5551Chr08:12401773..12401797 (25 bp)
GAAACTACTGACACAGTCCTGGCGC
LOC_Os08g20644
OsAffx.17091.1.S1_at--51--8971Chr08:12401765..12401789 (25 bp)
TGACACAGTCCTGGCGCGCCTAATG
LOC_Os08g20644
OsAffx.17091.1.S1_at--519--7251Chr08:12401758..12401782 (25 bp)
GTCCTGGCGCGCCTAATGCATCTTG
LOC_Os08g20644
OsAffx.17091.1.S1_at--715--4151Chr08:12401751..12401775 (25 bp)
CGCGCCTAATGCATCTTGCTCTGAA
LOC_Os08g20644
OsAffx.17091.1.S1_at--864--4451Chr08:12401748..12401772 (25 bp)
GCCTAATGCATCTTGCTCTGAACAA
LOC_Os08g20644
OsAffx.17091.1.S1_at--836--3011Chr08:12401744..12401768 (25 bp)
AATGCATCTTGCTCTGAACAAGAAG
LOC_Os08g20644
OsAffx.17091.1.S1_at--471--4811Chr08:12401734..12401758 (25 bp)
GCTCTGAACAAGAAGGAATTCACCA
LOC_Os08g20644
OsAffx.17091.1.S1_at--376--2311Chr08:12401725..12401749 (25 bp)
AAGAAGGAATTCACCAAAGAGGGCA
LOC_Os08g20644
Target Sequence 
TTGTCATCGCCAACAGCTGGCCATGGTGGAAACTACTGACACAGTCCTGGCGCGCCTAATGCATCTTGCTCTGAACAAGA
AGGAATTCACCAAAGAGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis