Browse Element(s) Details


OsAffx.17095.1.S1_at

Description tigr:9639.m02018
TID=OsAffx.17095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2247010/11hypothetical protein
LOC_Os05g125401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22450OsAffx.20451.1.S1_at1/1111+12420245..12420869hypothetical protein
LOC_Os11g22460NANA11+12426563..12427120hypothetical protein
LOC_Os11g22470OsAffx.17095.1.S1_at10/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.26043.1.S1_x_at2/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.26043.1.S1_at2/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.7645.1.S1_at1/1111+12439334..12440720hypothetical protein
LOC_Os11g22480OsAffx.31090.1.S1_at11/1111+12441685..12444042hypothetical protein
LOC_Os11g22480OsAffx.26058.1.S1_at2/1111+12441685..12444042hypothetical protein
LOC_Os11g22480OsAffx.23458.1.S1_x_at1/1111+12441685..12444042hypothetical protein
LOC_Os11g22490OsAffx.31091.1.S1_x_at11/1111+12447975..12448392hypothetical protein
LOC_Os11g22500NANA11+12454116..12455323hypothetical protein
LOC_Os11g22510OsAffx.9652.1.S1_x_at2/1111+12457088..12461009hypothetical protein
LOC_Os11g22510OsAffx.20947.1.S1_x_at1/1111+12457088..12461009hypothetical protein
LOC_Os11g22530OsAffx.13733.1.S1_at2/1111+12461434..12470044retrotransposon protein, putative, unclassified
LOC_Os11g22530OsAffx.20553.1.S1_at1/1111+12461434..12470044retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17095.1.S1_at--327--2111Chr11:12440662..12440686 (25 bp)
ACAACTCTGATCTCGACCTTGTGGG
LOC_Os11g22470
OsAffx.17095.1.S1_at--257--4311Chr11:12440646..12440670 (25 bp)
CCTTGTGGGCCACCGGGAAATGCAA
LOC_Os11g22470
OsAffx.17095.1.S1_at--41--5592Chr11:12440630..12440654 (25 bp)
GAAATGCAAGCCTATCATATGTTGA
LOC_Os11g22470
OsAffx.17095.1.S1_at--1063--6651NONE
GTTGAAAGACCAAACCATGAAGAGT
NONE
OsAffx.17095.1.S1_at--318--1252Chr04:10033246..10033270 (25 bp)
AGTTGGGACTCTGCTTTATATGCAA
NONE
OsAffx.17095.1.S1_at--906--652Chr04:10032926..10033289 (25 bp)
ATGCAAATATTCCTATTACCCGCTC
NONE
OsAffx.17095.1.S1_at--297--212Chr04:10033272..10033295 (24 bp)
ATATTCCTATTACCCGCTCTTATGT
NONE
OsAffx.17095.1.S1_at--727--9351Chr11:12439556..12439835 (25 bp)
TCGAGAAGTCCCACGCAGGTCTCCT
LOC_Os11g22470
OsAffx.17095.1.S1_at--772--5271Chr11:12439472..12439496 (25 bp)
GAATGAGCAACACACCTTGGAGGAT
LOC_Os11g22470
OsAffx.17095.1.S1_at--883--2571Chr11:12439428..12439452 (25 bp)
AACGGCAGCAGTCTGTTGGTGCACA
LOC_Os11g22470
OsAffx.17095.1.S1_at--295--8613Chr04:10033859..10033878 (20 bp)
TGGTGCACAGCTCGCAAACTTCAAC
NONE
Target Sequence 
ACAACTCTGATCTCGACCTTGTGGGCCACCGGGAAATGCAAGCCTATCATATGTTGAAAGACCAAACCATGAAGAGTTGG
GACTCTGCTTTATATGCAAATATTCCTATTACCCGCTCTTATGTTGATGAGGCCTATTTGGTTCAATGCCACATACTCAA
ACATGGTCCAAATGATTATCTTATATTTTTGTTTCCCGGCTATGCAAATGAGATTACGTTACCTAACCCGGAGTTTCATT
TGTATAACTGCCGAGAACTAACCATTTCTTTCCAAGCGGAGTTGCCTCGAGAAGTCCCACGCAGGTCTCCTCTCGAGGGG
ATCTGGGAGAACTCATCCGGAGGATGGATACACTTAGAACTGCAGGCAGGGAATGAGCAACACACCTTGGAGGATCATGT
GGTACAGTCACGGGAACGGCAGCAGTCTGTTGGTGCACAGCTCGCAAACTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis