Browse Element(s) Details


OsAffx.17183.1.S1_at

Description tigr:9636.m02688
TID=OsAffx.17183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT005371 At1g76250
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g272006/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27170OsAffx.5948.1.S1_at11/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27170Os.16047.1.S1_at1/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27180Os.45976.1.S1_x_at3/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27180Os.45976.1.S1_at2/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27190OsAffx.17182.1.S1_at11/118+16478119..16478981F-box domain containing protein
LOC_Os08g27200OsAffx.17183.1.S1_at6/118+16483581..16484332hypothetical protein
LOC_Os08g27210OsAffx.17184.1.S1_at11/118+16486485..16487024hypothetical protein
LOC_Os08g27210Os.43876.2.S1_x_at1/118+16486485..16487024hypothetical protein
LOC_Os08g27220OsAffx.5949.1.S1_at11/118+16487328..16488266AP2 domain containing protein
LOC_Os08g27230NANA8+16488851..16489342hypothetical protein
LOC_Os08g27240Os.47452.1.A1_at7/118+16494729..16500531expressed protein
LOC_Os08g27250Os.54554.1.S1_at11/118+16506958..16509404expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17183.1.S1_at--80--7611Chr08:16481361..16481385 (25 bp)
GGGCAGCATGATTTTTTGGATGAAC
NONE
OsAffx.17183.1.S1_at--709--6531Chr08:16481370..16481394 (25 bp)
GATTTTTTGGATGAACGCGAGAGAG
NONE
OsAffx.17183.1.S1_at--916--2751Chr08:16483246..16483270 (25 bp)
AAGACGACAGTCAGCTATACGAGCT
NONE
OsAffx.17183.1.S1_at--8--8091Chr08:16483271..16483292 (22 bp)
GGAGCTACAGCTCTACTTGTGGCTA
NONE
OsAffx.17183.1.S1_at--330--1591NONE
AGCTCTACTTGTGGCTAGTGGTGCA
NONE
OsAffx.17183.1.S1_at--1079--2211Chr08:16484089..16484113 (25 bp)
CAAAATCAACGAGAAACCGCCCAAG
LOC_Os08g27200
OsAffx.17183.1.S1_at--704--1791Chr08:16484104..16484128 (25 bp)
ACCGCCCAAGTTAGACCACAGGAAG
LOC_Os08g27200
OsAffx.17183.1.S1_at--1079--6771Chr08:16484113..16484137 (25 bp)
GTTAGACCACAGGAAGCTAGCAGCT
LOC_Os08g27200
OsAffx.17183.1.S1_at--188--1611Chr08:16484134..16484158 (25 bp)
AGCTGCAGCAGGTGGCACAAATGTC
LOC_Os08g27200
OsAffx.17183.1.S1_at--1067--1771Chr08:16484213..16484237 (25 bp)
ACCGGACCGTCTATTGCGTGGAATG
LOC_Os08g27200
OsAffx.17183.1.S1_at--519--7531Chr08:16484230..16484254 (25 bp)
GTGGAATGTGCTAGCGCCGCAGTAC
LOC_Os08g27200
Target Sequence 
GGGCAGCATGATTTTTTGGATGAACGCGAGAGAGAGGATGAGTCCGGGTCTCTGGGAGGGCGGAGAGAGGAAGGGGGTGA
GGGAGAGGTTGAAGACGACAGTCAGCTATACGAGCTGGAGCTACAGCTCTACTTGTGGCTAGTGGTGCACAAGGGGGATC
ACCATGGTCTCACCATCACCCTCCTCTTGGCCGCGGCCTTCTTCTTCCTCATCCTCCTCTCCTCCTCCCTCGTCAAAATC
AACGAGAAACCGCCCAAGTTAGACCACAGGAAGCTAGCAGCTGCAGCAGGTGGCACAAATGTCGTGGAGGGGCGGATAGC
GGTCTGCCTCGTCGGAGCGGCACAGCGGTTCGAGCTCACCGGACCGTCTATTGCGTGGAATGTGCTAGCGCCGCAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis