Browse Element(s) Details


OsAffx.17184.1.S1_at

Description tigr:9636.m02689
TID=OsAffx.17184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2721011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27170OsAffx.5948.1.S1_at11/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27170Os.16047.1.S1_at1/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27180Os.45976.1.S1_x_at3/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27180Os.45976.1.S1_at2/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27190OsAffx.17182.1.S1_at11/118+16478119..16478981F-box domain containing protein
LOC_Os08g27200OsAffx.17183.1.S1_at6/118+16483581..16484332hypothetical protein
LOC_Os08g27210OsAffx.17184.1.S1_at11/118+16486485..16487024hypothetical protein
LOC_Os08g27210Os.43876.2.S1_x_at1/118+16486485..16487024hypothetical protein
LOC_Os08g27220OsAffx.5949.1.S1_at11/118+16487328..16488266AP2 domain containing protein
LOC_Os08g27230NANA8+16488851..16489342hypothetical protein
LOC_Os08g27240Os.47452.1.A1_at7/118+16494729..16500531expressed protein
LOC_Os08g27250Os.54554.1.S1_at11/118+16506958..16509404expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17184.1.S1_at--803--5871Chr08:16486523..16486547 (25 bp)
GAGCGCCCAGGTGTTGTGCCGGTCG
LOC_Os08g27210
OsAffx.17184.1.S1_at--897--4391Chr08:16486560..16486584 (25 bp)
GCCAACGAGGCGTGCAGCATGCGCA
LOC_Os08g27210
OsAffx.17184.1.S1_at--718--6211Chr08:16486566..16486590 (25 bp)
GAGGCGTGCAGCATGCGCACCTTGC
LOC_Os08g27210
OsAffx.17184.1.S1_at--1111--2691Chr08:16486632..16486656 (25 bp)
AAGCTCAACGAGACGTCGGTCACCG
LOC_Os08g27210
OsAffx.17184.1.S1_at--356--3751Chr08:16486635..16486659 (25 bp)
CTCAACGAGACGTCGGTCACCGGCG
LOC_Os08g27210
OsAffx.17184.1.S1_at--694--8251Chr08:16486816..16486840 (25 bp)
GGCACCGGCGCAACGTGGACGACGA
LOC_Os08g27210
OsAffx.17184.1.S1_at--858--5991Chr08:16486845..16486869 (25 bp)
GAGAGCAGGGAGGACCCCCACGACA
LOC_Os08g27210
OsAffx.17184.1.S1_at--537--9111Chr08:16486875..16486899 (25 bp)
TGCTGCCGGCGCCTCATGTCGCTGG
LOC_Os08g27210
OsAffx.17184.1.S1_at--336--771Chr08:16486890..16486914 (25 bp)
ATGTCGCTGGACAACTCGTGCGTCT
LOC_Os08g27210
OsAffx.17184.1.S1_at--275--8531Chr08:16486897..16486921 (25 bp)
TGGACAACTCGTGCGTCTGCCAGGC
LOC_Os08g27210
OsAffx.17184.1.S1_at--139--2211Chr08:16486900..16486924 (25 bp)
ACAACTCGTGCGTCTGCCAGGCGGC
LOC_Os08g27210
Target Sequence 
GAGCGCCCAGGTGTTGTGCCGGTCGCAGTTCAACCTCGCCAACGAGGCGTGCAGCATGCGCACCTTGCCGGGGGTCATGA
GGCCGCCGCTCGTGCCGCCGCGCCCGCTCAAGCTCAACGAGACGTCGGTCACCGGCGGCGGGAGCCGCAGGCACGGGCTC
CAGTCTCGGGGCGGCGGTGGCGGCGGCGGCGACGAGTATGACGACGACGGCGACTACTACTACGACGCCGACGGCGAGGA
GCAGGGAGGAGGCGGCGGCGACGAGGAGGGGCGTGGGCGGCGGCGGCGCCACCGGCACCGGCGCAACGTGGACGACGACG
ACGAGAGCAGGGAGGACCCCCACGACACGGCGTGCTGCCGGCGCCTCATGTCGCTGGACAACTCGTGCGTCTGCCAGGCG
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis