Browse Element(s) Details


OsAffx.17191.1.S1_at

Description tigr:9636.m02721
TID=OsAffx.17191.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2753011/11hypothetical protein
LOC_Os08g298541/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27480OsAffx.14941.1.S1_at11/118+16641694..16642639hypothetical protein
LOC_Os08g27480OsAffx.14941.1.S1_s_at8/118+16641694..16642639hypothetical protein
LOC_Os08g27490OsAffx.14941.4.S1_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.14941.4.S1_s_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.25952.1.S1_s_at1/118+16643638..16647767hypothetical protein
LOC_Os08g27500NANA8+16650539..16652968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g27520NANA8+16658309..16659979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27530OsAffx.17191.1.S1_at11/118+16660405..16663927hypothetical protein
LOC_Os08g27540Os.54366.1.S1_at11/118+16664745..16668048expressed protein
LOC_Os08g27550NANA8+16668802..16669157hypothetical protein
LOC_Os08g27560OsAffx.5952.1.S1_at2/118+16670594..16671058hypothetical protein
LOC_Os08g27570OsAffx.278.1.S1_at1/118+16672003..16676015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27580Os.50614.1.S1_at11/118+16678856..16682068expressed protein
LOC_Os08g27580Os.50614.2.S1_x_at11/118+16678856..16682068expressed protein
LOC_Os08g27590OsAffx.23483.1.S1_x_at1/118+16687498..16690773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27590OsAffx.25361.1.S1_at1/118+16687498..16690773retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17191.1.S1_at--704--8951Chr08:16660921..16660945 (25 bp)
TGACATGATTTTGGCGCCGGTTCGC
LOC_Os08g27530
OsAffx.17191.1.S1_at--433--1751Chr08:16660897..16660921 (25 bp)
CACGGTTGCACCTCAAGTACAGTAC
LOC_Os08g27530
OsAffx.17191.1.S1_at--28--10733Chr08:18217208..18217232 (25 bp)
TTGCAAGCCCAGTTTCAAGCCTTTC
LOC_Os08g29854
OsAffx.17191.1.S1_at--681--5051Chr08:16660798..16660822 (25 bp)
GCAGCAGCTAAATCAACCCAACAAC
LOC_Os08g27530
OsAffx.17191.1.S1_at--659--5811Chr08:16660753..16660777 (25 bp)
GACCCAAGCCGAGGGAACTCCAAGT
LOC_Os08g27530
OsAffx.17191.1.S1_at--325--2851Chr08:16660732..16660756 (25 bp)
AAGTCAGGGTGCTCTAGCTGGGCAA
LOC_Os08g27530
OsAffx.17191.1.S1_at--11--10011Chr08:16660718..16660742 (25 bp)
TAGCTGGGCAACTGCTGGGCCAGTA
LOC_Os08g27530
OsAffx.17191.1.S1_at--905--7551Chr08:16660702..16660726 (25 bp)
GGGCCAGTACGGCATTTCAAGCCAA
LOC_Os08g27530
OsAffx.17191.1.S1_at--191--6571Chr08:16660612..16660636 (25 bp)
GATTCAAGCACCTATGACCTTCATG
LOC_Os08g27530
OsAffx.17191.1.S1_at--845--8231Chr08:16660507..16660531 (25 bp)
GGCACAAGCCGTTTCGACGGATCAG
LOC_Os08g27530
OsAffx.17191.1.S1_at--572--2671Chr08:16660481..16660505 (25 bp)
AAGCCCAGGCGTTGGTGTTTGGCAC
LOC_Os08g27530
Target Sequence 
TGACATGATTTTGGCGCCGGTTCGCACGGTTGCACCTCAAGTACAGTACCCGAAGCCCACTCACATGCCAAAAGCAATGA
TGGAGGCAGCTTTGGCCTTGCAAGCCCAGTTTCAAGCCTTTCTGCAGCAGCTAAATCAACCCAACAACTTACCAAGAATT
TCACCTTCGACCCAAGCCGAGGGAACTCCAAGTCAGGGTGCTCTAGCTGGGCAACTGCTGGGCCAGTACGGCATTTCAAG
CCAAGCGAACCAGCTGGCTCAAGGGGTTTCGCCTCGAAGCCAATTACCGCAATTCGACCCCAGTGCCACGATTCAAGCAC
CTATGACCTTCATGCAAGCTACGCCCCTCGGGTTCGGAACAGCTCCACTGCCGAACCAAGCCTGGACCCAAGCCATGATC
GACCCAACCGTGGCGGCACAAGCCGTTTCGACGGATCAGCAAGCCCAGGCGTTGGTGTTTGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis