Browse Element(s) Details


OsAffx.17219.1.S1_at

Description tigr:9636.m02865
TID=OsAffx.17219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2894011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28890OsAffx.17217.1.S1_x_at11/118+17540002..17541542protein kinase family protein, putative, expressed
LOC_Os08g28900OsAffx.29407.1.S1_at10/118+17544044..17545849Response regulator receiver domain containing protein, expressed
LOC_Os08g28920OsAffx.5971.1.S1_at8/118+17550294..17552445hypothetical protein
LOC_Os08g28920OsAffx.1766.1.S1_at1/118+17550294..17552445hypothetical protein
LOC_Os08g28930OsAffx.2069.1.S1_at1/118+17554333..17560815retrotransposon, putative, centromere-specific
LOC_Os08g28940OsAffx.17219.1.S1_at11/118+17566362..17570794F-box domain containing protein
LOC_Os08g28950OsAffx.29407.2.S1_at9/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.29407.1.S1_at4/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.32068.1.S1_at1/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28960OsAffx.29408.1.S1_at10/118+17587876..17592203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17219.1.S1_at--405--91Chr08:17569509..17569533 (25 bp)
ATTCCAGCTAGATTCTTTTGCAGTG
LOC_Os08g28940
OsAffx.17219.1.S1_at--698--8851Chr08:17569707..17569731 (25 bp)
TGATCGTCTCAATAACGCATGCCCG
LOC_Os08g28940
OsAffx.17219.1.S1_at--567--1831Chr08:17569721..17569745 (25 bp)
ACGCATGCCCGGTTTTGGAAAATCT
LOC_Os08g28940
OsAffx.17219.1.S1_at--66--5151Chr08:17569738..17569894 (25 bp)
GAAAATCTGGGTCAACAAACGGGCA
LOC_Os08g28940
OsAffx.17219.1.S1_at--11--2211Chr08:17569906..17569930 (25 bp)
ACAAACTCTTACCTGACATTCACAA
LOC_Os08g28940
OsAffx.17219.1.S1_at--438--3191Chr08:17569931..17569955 (25 bp)
CAATCACTCTCGTTGATGCTTCAGA
LOC_Os08g28940
OsAffx.17219.1.S1_at--735--8211Chr08:17570504..17570528 (25 bp)
GGAATCTCAGAACCTTGCGCTTGGG
LOC_Os08g28940
OsAffx.17219.1.S1_at--286--9011Chr08:17570529..17570553 (25 bp)
TGAATGGTGCATGGCCGATAATTTC
LOC_Os08g28940
OsAffx.17219.1.S1_at--194--9751Chr08:17570547..17570571 (25 bp)
TAATTTCTTGCCTCTACGCCAATAT
LOC_Os08g28940
OsAffx.17219.1.S1_at--160--2651Chr08:17570575..17570599 (25 bp)
AACCACTCACCTGTTCTGAGGAAGG
LOC_Os08g28940
OsAffx.17219.1.S1_at--627--8531Chr08:17570706..17570730 (25 bp)
TGGATTGGTGGTCCGAACTCACGAC
LOC_Os08g28940
Target Sequence 
ATTCCAGCTAGATTCTTTTGCAGTGGACCGGGCCGGTTCTTGGATCAACCATGCTATCAAGCACAACGCTAAAGTAGTTA
AATTTTCTGAGTATCCAAGTTGGGAACCTTTTTACTTGGATCCAGAACTTGTGGAGTTCAGTTCTCGGTATCTAAAAACA
TTGGAGCTGACTAATGCAGCTCTAAATGAGATGGTATTTGATCGTCTCAATAACGCATGCCCGGTTTTGGAAAATCTGGG
TCAACAAACGGGCAGTTTTTCATTTACAAACTCTTACCTGACATTCACAACAATCACTCTCGTTGATGCTTCAGATGTCA
CAAGCATAGAGTTGACAGCTACTGATAGACAGTTTACATTCATGGAACAACAAGGAAGTAGGCCGATGTTTAGGAATCTC
AGAACCTTGCGCTTGGGTGAATGGTGCATGGCCGATAATTTCTTGCCTCTACGCCAATATGTCAACCACTCACCTGTTCT
GAGGAAGGTGTTTCTGAAGCTCAGTCTGGTGGATTGGTGGTCCGAACTCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis