Browse Element(s) Details


OsAffx.29408.1.S1_at

Description tigr:9636.m02867
TID=OsAffx.29408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2896010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28940OsAffx.17219.1.S1_at11/118+17566362..17570794F-box domain containing protein
LOC_Os08g28950OsAffx.29407.2.S1_at9/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.29407.1.S1_at4/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.32068.1.S1_at1/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28960OsAffx.29408.1.S1_at10/118+17587876..17592203expressed protein
LOC_Os08g28980Os.26049.1.S2_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980Os.26049.1.S1_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980OsAffx.26666.1.S1_x_at1/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28970Os.9700.1.S1_at10/118+17597590..17599043expressed protein
LOC_Os08g28990Os.41695.15.S1_s_at11/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.2.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.3.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.5.S1_x_at9/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.4.S1_x_at1/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g29000OsAffx.19542.3.S1_x_at4/118+17616312..17621988retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29408.1.S1_at--1109--3511NONE
CATGATATATTGCAAGCTTCAACCC
NONE
OsAffx.29408.1.S1_at--103--3291Chr08:17590933..17590957 (25 bp)
CAAACTATTGCTTAGCCGTGACAAT
LOC_Os08g28960
OsAffx.29408.1.S1_at--184--4251Chr08:17590948..17590972 (25 bp)
CCGTGACAATCTTGATGCTCCCATG
LOC_Os08g28960
OsAffx.29408.1.S1_at--888--6012Chr08:17590984..17591008 (25 bp)
GAGAGATTCTTTTGCGATTGACCGT
LOC_Os08g28960
OsAffx.29408.1.S1_at--1045--4031Chr08:17590998..17591022 (25 bp)
CGATTGACCGTGCTAGTTCTTGGGT
LOC_Os08g28960
OsAffx.29408.1.S1_at--257--1231Chr08:17591012..17591036 (25 bp)
AGTTCTTGGGTCAATCATGCTATCA
LOC_Os08g28960
OsAffx.29408.1.S1_at--1133--1051Chr08:17591050..17591074 (25 bp)
AGTGGTTAAATTTGCCGAGTATGAA
LOC_Os08g28960
OsAffx.29408.1.S1_at--975--3591Chr08:17591121..17591145 (25 bp)
CTTGGTATCTTAAAACTCGAGAGCT
LOC_Os08g28960
OsAffx.29408.1.S1_at--1116--2531Chr08:17591134..17591158 (25 bp)
AACTCGAGAGCTGACTAATGCTGCT
LOC_Os08g28960
OsAffx.29408.1.S1_at--858--671Chr08:17591163..17591187 (25 bp)
ATGAAACGATATTTGATCCTCTCAA
LOC_Os08g28960
OsAffx.29408.1.S1_at--786--9691Chr08:17591184..17591208 (25 bp)
TCAACAACGCATGCCCAACTTTAGA
LOC_Os08g28960
Target Sequence 
CATGATATATTGCAAGCTTCAACCCCTTCAGTTGTCTTGCTCCATGAGAAGAATAAGCATGGCGAAATTATCCATGCACA
AGGAAATGTTCAGGGGACATCATCTAGTGGCCACAAGGAACCCTCCAATCCCTATGGAAAAGATAGGGAAATTTTTGGTA
GTTCTATTAACAAACTATTGCTTAGCCGTGACAATCTTGATGCTCCCATGGATACATTCAAGAGAGATTCTTTTGCGATT
GACCGTGCTAGTTCTTGGGTCAATCATGCTATCAAGCACAACGCTAAAGTGGTTAAATTTGCCGAGTATGAAAGATGGGA
ACCTTTCTACTTGGATCCAAAACTTGTGGAGTTCAGTTCTTGGTATCTTAAAACTCGAGAGCTGACTAATGCTGCTCTAA
ATGAAACGATATTTGATCCTCTCAACAACGCATGCCCAACTTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis