Browse Element(s) Details


OsAffx.17251.1.S1_at

Description tigr:9636.m03083
TID=OsAffx.17251.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3086011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed
LOC_Os08g30820Os.33747.1.S1_at11/118+18898491..18900444pre-mrna cleavage factor, putative, expressed
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein
LOC_Os08g30884Os.55348.1.S1_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_s_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884Os.50847.1.S1_at10/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_at4/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30900Os.52835.1.S1_at10/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30900OsAffx.17252.2.S1_x_at1/118+18938187..18943536YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17251.1.S1_at--482--4791Chr08:18916688..18916712 (25 bp)
GCTCCTTCCAGATCCACCAAGTGAT
LOC_Os08g30860
OsAffx.17251.1.S1_at--782--6451Chr08:18916666..18916690 (25 bp)
GATCAAGATCATGGCTTTGGTGAGC
LOC_Os08g30860
OsAffx.17251.1.S1_at--201--4871Chr08:18916653..18916677 (25 bp)
GCTTTGGTGAGCCATTTTCGAGCAC
LOC_Os08g30860
OsAffx.17251.1.S1_at--201--4331Chr08:18916642..18916666 (25 bp)
CCATTTTCGAGCACATCACCATCTA
LOC_Os08g30860
OsAffx.17251.1.S1_at--389--451Chr08:18916622..18916646 (25 bp)
ATCTATCCTAGAAGCAGTCGCGCGT
LOC_Os08g30860
OsAffx.17251.1.S1_at--287--4151Chr08:18916602..18916626 (25 bp)
CGCGTGCGTCGAGGCATCGATGCAA
LOC_Os08g30860
OsAffx.17251.1.S1_at--280--9391Chr08:18916586..18916610 (25 bp)
TCGATGCAAGACCAAAGTCGTCAAG
LOC_Os08g30860
OsAffx.17251.1.S1_at--743--3291Chr08:18916574..18916598 (25 bp)
CAAAGTCGTCAAGTGCTCTGTGCTA
LOC_Os08g30860
OsAffx.17251.1.S1_at--433--9731Chr08:18916566..18916590 (25 bp)
TCAAGTGCTCTGTGCTAGCTAGCGC
LOC_Os08g30860
OsAffx.17251.1.S1_at--633--9171Chr08:18916179..18916555 (25 bp)
TCCACGGGAGTTCTTACTACGGGCG
LOC_Os08g30860
OsAffx.17251.1.S1_at--1098--8631Chr08:18916150..18916174 (25 bp)
TGGGACGGGCATTTTCCGACCACCT
LOC_Os08g30860
Target Sequence 
GCTCCTTCCAGATCCACCAAGTGATCAAGATCATGGCTTTGGTGAGCCATTTTCGAGCACATCACCATCTATCCTAGAAG
CAGTCGCGCGTGCGTCGAGGCATCGATGCAAGACCAAAGTCGTCAAGTGCTCTGTGCTAGCTAGCGCCTCCGCCGCCTCC
ACGGGAGTTCTTACTACGGGCGAAAATGGGACGGGCATTTTCCGACCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis