Browse Element(s) Details


OsAffx.17268.1.S1_at

Description tigr:9636.m03127
TID=OsAffx.17268.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3131010/11AC transposase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31290OsAffx.29450.1.S1_at11/118+19227240..19227527hypothetical protein
LOC_Os08g31300OsAffx.29451.1.S1_at11/118+19231800..19232104hypothetical protein
LOC_Os08g31310OsAffx.17268.1.S1_at10/118+19236505..19237441AC transposase, putative
LOC_Os08g31310Os.51987.1.S1_s_at2/118+19236505..19237441AC transposase, putative
LOC_Os08g31320NANA8+19238770..19240649hypothetical protein
LOC_Os08g31330OsAffx.29452.1.S1_at10/118+19241065..19243305hypothetical protein
LOC_Os08g31340Os.55527.1.S1_at10/118+19250110..19253732heavy metal-associated domain containing protein, expressed
LOC_Os08g31340Os.49537.1.S1_x_at1/118+19250110..19253732heavy metal-associated domain containing protein, expressed
LOC_Os08g31350OsAffx.27704.1.S1_at2/118+19256571..19260199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g31350Os.43636.1.S1_at1/118+19256571..19260199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g31360NANA8+19262334..19262678hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17268.1.S1_at--410--6951Chr08:19237354..19237378 (25 bp)
GTAGATTGCTTTCTTGATCCAAGGT
LOC_Os08g31310
OsAffx.17268.1.S1_at--254--1431NONE
AGAAAAGATCTATGTGTCACCTGTA
NONE
OsAffx.17268.1.S1_at--371--7451Chr08:19236915..19236939 (25 bp)
GTGTCACCTGTAGCTTCAGAATCAG
LOC_Os08g31310
OsAffx.17268.1.S1_at--964--391Chr08:19236895..19236919 (25 bp)
ATCAGCATTTAGTGCAGGCGGACGT
LOC_Os08g31310
OsAffx.17268.1.S1_at--588--8851Chr08:19236865..19236889 (25 bp)
TGATCCATTTCACAATCGTCTAGAT
LOC_Os08g31310
OsAffx.17268.1.S1_at--1060--3031Chr08:19236852..19236876 (25 bp)
AATCGTCTAGATCCTGAAATCGTGC
LOC_Os08g31310
OsAffx.17268.1.S1_at--1022--551Chr08:19236842..19236866 (25 bp)
ATCCTGAAATCGTGCAATCTTTGGT
LOC_Os08g31310
OsAffx.17268.1.S1_at--862--1691Chr08:19236813..19236837 (25 bp)
ACCAAAGATTGGATTGCGGCATTAA
LOC_Os08g31310
OsAffx.17268.1.S1_at--151--5591Chr08:19236689..19236713 (25 bp)
GAAATGTGGTTTGTTCTATCATCAA
LOC_Os08g31310
OsAffx.17268.1.S1_at--358--5631Chr08:19236657..19236681 (25 bp)
GACACAGAGAACCTTGAGCGATCTT
LOC_Os08g31310
OsAffx.17268.1.S1_at--965--3711Chr08:19236548..19236653 (25 bp)
CTACCTTGATGACCATGGCCACAAA
LOC_Os08g31310
Target Sequence 
GTAGATTGCTTTCTTGATCCAAGGTTCAAGACAAACCTAGTAAACTATTATGCAGAAAAGATCTATGTGTCACCTGTAGC
TTCAGAATCAGCATTTAGTGCAGGCGGACGTGTTATTGATCCATTTCACAATCGTCTAGATCCTGAAATCGTGCAATCTT
TGGTTTGCACCAAAGATTGGATTGCGGCATTAAGAAAAGGTGGAAATGTGGTTTGTTCTATCATCAATGAGATGGACACA
GAGAACCTTGAGCGATCTTTTGCTACCTTGATGACCATGGCCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis