Browse Element(s) Details


Os.55527.1.S1_at

Description gb:AK108256.1
DB_XREF= gi:32993465
TID=Os.55527.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-A09, full insert sequence.
FL= gb:AK108256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3134010/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31290OsAffx.29450.1.S1_at11/118+19227240..19227527hypothetical protein
LOC_Os08g31300OsAffx.29451.1.S1_at11/118+19231800..19232104hypothetical protein
LOC_Os08g31310OsAffx.17268.1.S1_at10/118+19236505..19237441AC transposase, putative
LOC_Os08g31310Os.51987.1.S1_s_at2/118+19236505..19237441AC transposase, putative
LOC_Os08g31320NANA8+19238770..19240649hypothetical protein
LOC_Os08g31330OsAffx.29452.1.S1_at10/118+19241065..19243305hypothetical protein
LOC_Os08g31340Os.55527.1.S1_at10/118+19250110..19253732heavy metal-associated domain containing protein, expressed
LOC_Os08g31340Os.49537.1.S1_x_at1/118+19250110..19253732heavy metal-associated domain containing protein, expressed
LOC_Os08g31350OsAffx.27704.1.S1_at2/118+19256571..19260199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g31350Os.43636.1.S1_at1/118+19256571..19260199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g31360NANA8+19262334..19262678hypothetical protein
LOC_Os08g31370OsAffx.8372.1.S1_at4/118+19263588..19266947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g31370OsAffx.8371.1.S1_at3/118+19263588..19266947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g31380OsAffx.16467.1.S1_at9/118+19271437..19272388hypothetical protein
LOC_Os08g31380Os.26886.2.S1_s_at7/118+19271437..19272388hypothetical protein
LOC_Os08g31380Os.26886.6.S1_s_at6/118+19271437..19272388hypothetical protein
LOC_Os08g31390NANA8+19273153..19275556retrotransposon protein, putative, unclassified
LOC_Os08g31400Os.26886.1.S1_x_at6/118+19278474..19281819transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g31400Os.26886.3.S1_x_at4/118+19278474..19281819transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0030001biological_processmetal ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55527.1.S1_at--486--2851NONE
AAGTCCTCCAGGTGGTGGTCATGAA
NONE
Os.55527.1.S1_at--668--2891Chr08:19253265..19253288 (24 bp)
AAGGTGTGACGTCGTTCAGCATCGA
LOC_Os08g31340
Os.55527.1.S1_at--813--4031Chr08:19253276..19253300 (25 bp)
CGTTCAGCATCGACCTGGAGAGCAA
LOC_Os08g31340
Os.55527.1.S1_at--820--8951Chr08:19253306..19253330 (25 bp)
TGACAGTGATGGGTCACGTGTCGCC
LOC_Os08g31340
Os.55527.1.S1_at--1036--4331Chr08:19253439..19253463 (25 bp)
CCATGGATGCTAGCTTCGCTGAGAA
LOC_Os08g31340
Os.55527.1.S1_at--992--5331Chr08:19253465..19253489 (25 bp)
GAAGTATATGCTTTCTGCATGCGAA
LOC_Os08g31340
Os.55527.1.S1_at--150--4991Chr08:19253481..19253505 (25 bp)
GCATGCGAAATTCTTCTAGCTAGCT
LOC_Os08g31340
Os.55527.1.S1_at--349--1571Chr08:19253075..19253526 (25 bp)
AGCTAGTGGCTACTGGGCACAGCAA
LOC_Os08g31340
Os.55527.1.S1_at--574--3531Chr08:19253646..19253670 (25 bp)
CATGCGTGGTGAACTGTGCGTTGCT
LOC_Os08g31340
Os.55527.1.S1_at--653--7451Chr08:19253672..19253696 (25 bp)
GTGTCTTGTGCTGTGTCGTGTACTC
LOC_Os08g31340
Os.55527.1.S1_at--944--7471Chr08:19253703..19253727 (25 bp)
GTGTGTCCATGCATATGCTTTGCTT
LOC_Os08g31340
Target Sequence 
AAGTCCTCCAGGTGGTGGTCATGAAGGTGGCTATTCACTGCCAGGGGTGTGCAGGGAAAGTGAGGAAGCATATCTCCAAG
ATGGAAGGTGTGACGTCGTTCAGCATCGACCTGGAGAGCAAGAAGGTGACAGTGATGGGTCACGTGTCGCCGGCGGGCGT
CCTCGAGAGCATCTCCAAGGTCAAGAAGGCCGAGCTCCTCTTCCTCTGATCATCATCGTCCTCTCGCCGTCGCCGTCGCC
GGACGCCGCCGGCGCGTCGCCATGGATGCTAGCTTCGCTGAGAAAGAAGTATATGCTTTCTGCATGCGAAATTCTTCTAG
CTAGCTAGTGGCTACTGGGCACAGCAAGAAGAGAGAGGTTAATTAGAGGAGAGATAGAGGGAGAGAGAGAGAGAGACAGA
GGCAGGGGTACATGCTGTGATAGATCGATGGGTGAAAGCTTAGAGAGAGGCAGGGGCAGAGGCAGGCATGCGTGGTGAAC
TGTGCGTTGCTGGTGTCTTGTGCTGTGTCGTGTACTCGTGTGTGTGTGTCCATGCATATGCTTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis