Browse Element(s) Details


OsAffx.17274.1.S1_at

Description tigr:9636.m03166
TID=OsAffx.17274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3169011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31670OsAffx.6000.1.S1_at11/118+19499933..19502410transporter, putative
LOC_Os08g31680Os.24718.1.S1_at1/118+19503134..19508739retrotransposon protein, putative, unclassified
LOC_Os08g31690OsAffx.17274.1.S1_at11/118+19511367..19512629F-box domain containing protein, expressed
LOC_Os08g31700OsAffx.17275.1.S1_x_at10/118+19513610..19515281expressed protein
LOC_Os08g31700OsAffx.17275.1.S1_at10/118+19513610..19515281expressed protein
LOC_Os08g31710Os.11090.1.S1_at11/118+19515662..19517229transporter, putative, expressed
LOC_Os08g31720OsAffx.17276.1.S1_at11/118+19522513..19523186Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g31730OsAffx.29486.2.S1_x_at1/118+19529677..19530255hypothetical protein
LOC_Os08g31740OsAffx.17278.1.S1_at11/118+19532669..19537354hypothetical protein
LOC_Os08g31740Os.2254.1.S1_at1/118+19532669..19537354hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17274.1.S1_at--914--8751Chr08:19511914..19511938 (25 bp)
TGTACGCCCTCGCTCATGATGAGAA
LOC_Os08g31690
OsAffx.17274.1.S1_at--397--711Chr08:19511899..19511923 (25 bp)
ATGATGAGAACCTCCTTGTCGTCAA
LOC_Os08g31690
OsAffx.17274.1.S1_at--1127--10811Chr08:19511884..19511908 (25 bp)
TTGTCGTCAACATCAGCCAGGATCC
LOC_Os08g31690
OsAffx.17274.1.S1_at--149--6371Chr08:19511849..19511873 (25 bp)
GATCCACAGATCTCCCAAATTGGGC
LOC_Os08g31690
OsAffx.17274.1.S1_at--1055--3351Chr08:19511805..19511829 (25 bp)
CACCTGGTCTTCAGTTCTGATTACG
LOC_Os08g31690
OsAffx.17274.1.S1_at--180--5411Chr08:19511748..19511772 (25 bp)
GAAGCTCTACCTAGTTGAATCATGT
LOC_Os08g31690
OsAffx.17274.1.S1_at--517--9631Chr08:19511583..19511607 (25 bp)
TCAGATGGTTTTCCTTGGACGGCCA
LOC_Os08g31690
OsAffx.17274.1.S1_at--985--8111Chr08:19511567..19511591 (25 bp)
GGACGGCCATGCTCTAAGGCAGTGT
LOC_Os08g31690
OsAffx.17274.1.S1_at--1103--4211Chr08:19511542..19511566 (25 bp)
CCGCGTCTCAGTACGGGATGCCAAA
LOC_Os08g31690
OsAffx.17274.1.S1_at--953--8011Chr08:19511460..19511484 (25 bp)
GGAGGAGACCACTTCTGTCAATGTC
LOC_Os08g31690
OsAffx.17274.1.S1_at--296--3831Chr08:19511402..19511426 (25 bp)
CTGCCGATGGCCTGGAAGCATGAGA
LOC_Os08g31690
Target Sequence 
TGTACGCCCTCGCTCATGATGAGAACCTCCTTGTCGTCAACATCAGCCAGGATCCAAACACCGGCGATCCACAGATCTCC
CAAATTGGGCAGGTCATCAAGGGCGATCCCACCTGGTCTTCAGTTCTGATTACGGATGACGACGACACAAGCACAACGGA
CAAAAAGAAGCTCTACCTAGTTGAATCATGTGGTGTATTGCTGATGGTACGCAGGAAGGTTTGCTGCAGAGTGGTAGGCA
AGACCGTCGTGCCTGGACAGAACGAGTTTGAGGTGTTCAAGGCTGATTTGGAGAACTCACGGTGGGTGAATGTGACAACC
CTTGGGGTTGATCAGATGGTTTTCCTTGGACGGCCATGCTCTAAGGCAGTGTCCGCGTCTCAGTACGGGATGCCAAATGA
CCAAATCTTCTTCCTTGATGATGTTATGGAGAATAACAAGGAGTATTCCTATGAGGAGGAGACCACTTCTGTCAATGTCT
ACGACATGAGGAGCGCCGAGGTCTCTTCCCCTCTGCCGATGGCCTGGAAGCATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis