Browse Element(s) Details


OsAffx.17297.1.S1_at

Description tigr:9636.m03253
TID=OsAffx.17297.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3256011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32520Os.43236.1.S1_at9/118+20011464..20012574expressed protein
LOC_Os08g32530OsAffx.17296.1.S1_x_at11/118+20018462..20019765hypothetical protein
LOC_Os08g32540OsAffx.29475.2.S1_s_at11/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32540OsAffx.29475.2.S1_at5/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32550NANA8+20029908..20030588Zinc knuckle family protein
LOC_Os08g32560OsAffx.17297.1.S1_at11/118+20032192..20032860hypothetical protein
LOC_Os08g32570Os.54408.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.2.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.54408.1.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32580Os.2741.4.S1_x_at8/118+20043808..20049748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g32600Os.32734.1.S1_at11/118+20054145..20059544Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17297.1.S1_at--1036--4491Chr08:20032528..20032552 (25 bp)
GCCGTCGCGCAGAGGATGCTCTACG
LOC_Os08g32560
OsAffx.17297.1.S1_at--1005--5031Chr08:20032536..20032560 (25 bp)
GCAGAGGATGCTCTACGACGACCTC
LOC_Os08g32560
OsAffx.17297.1.S1_at--374--2611Chr08:20032618..20032642 (25 bp)
AACGCCGCCACGAGGGTGACGCTGA
LOC_Os08g32560
OsAffx.17297.1.S1_at--130--5911Chr08:20032657..20032681 (25 bp)
GAGCTCGCCGAGCTACTGTGCCAGA
LOC_Os08g32560
OsAffx.17297.1.S1_at--701--4231Chr08:20032664..20032688 (25 bp)
CCGAGCTACTGTGCCAGACGGTGCT
LOC_Os08g32560
OsAffx.17297.1.S1_at--110--9931Chr08:20032670..20032694 (25 bp)
TACTGTGCCAGACGGTGCTCCCGGC
LOC_Os08g32560
OsAffx.17297.1.S1_at--820--1911Chr08:20032739..20032763 (25 bp)
ACGTGTGGCGCGTCGCCCGGATCAT
LOC_Os08g32560
OsAffx.17297.1.S1_at--1009--4191Chr08:20032754..20032778 (25 bp)
CCCGGATCATGGAGGCGCAGCGCGT
LOC_Os08g32560
OsAffx.17297.1.S1_at--977--891Chr08:20032766..20032790 (25 bp)
AGGCGCAGCGCGTTCGCAGAGAAGA
LOC_Os08g32560
OsAffx.17297.1.S1_at--24--2771Chr08:20032787..20032811 (25 bp)
AAGACGAGGCGCTCCATGGCAAGTG
LOC_Os08g32560
OsAffx.17297.1.S1_at--1031--4571Chr08:20032795..20032819 (25 bp)
GCGCTCCATGGCAAGTGCAGGAAGT
LOC_Os08g32560
Target Sequence 
GCCGTCGCGCAGAGGATGCTCTACGACGACCTCGCACTCGACGGCGCGCCGGCGCCGCTGCTGGAGCGGATCGCGCGCGC
GGAGGCGCTCAACGCCGCCACGAGGGTGACGCTGAGCCTGAGCGACGCCGAGCTCGCCGAGCTACTGTGCCAGACGGTGC
TCCCGGCGAACGCGGCCGCCGCCATCCGCTCGGGCGCGGCCACCATGCGCGACGTGTGGCGCGTCGCCCGGATCATGGAG
GCGCAGCGCGTTCGCAGAGAAGACGAGGCGCTCCATGGCAAGTGCAGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis