Browse Element(s) Details


OsAffx.17372.1.S1_x_at

Description tigr:9636.m03726
TID=OsAffx.17372.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3710410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37070OsAffx.17371.1.S1_at11/118+23292694..23293014hypothetical protein
LOC_Os08g37080NANA8+23307846..23308678hypothetical protein
LOC_Os08g37090OsAffx.29568.1.S1_at11/118+23311300..23311809hypothetical protein
LOC_Os08g37104Os.31832.1.S1_at11/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_x_at10/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_at10/118+23315214..23319987expressed protein
LOC_Os08g37104Os.18383.1.A1_x_at7/118+23315214..23319987expressed protein
LOC_Os08g37120OsAffx.12861.3.S1_x_at10/118+23327503..23330255hypothetical protein
LOC_Os08g37120OsAffx.12861.2.S1_x_at9/118+23327503..23330255hypothetical protein
LOC_Os08g37130Os.7631.1.S1_at11/118+23331091..23335550oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os08g37140OsAffx.17373.1.S1_at11/118+23335901..23339725phosphoglycerate mutase family protein, expressed
LOC_Os08g37150Os.50419.1.S1_x_at4/118+23342499..23343393uncharacterized plant-specific domain TIGR01570 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17372.1.S1_x_at--214--9511Chr08:23317095..23317119 (25 bp)
TCTCTAGATTCATTACGTGCAGCAT
LOC_Os08g37104
OsAffx.17372.1.S1_x_at--436--251Chr08:23317118..23317142 (25 bp)
ATATGCATCTGCAACTCGAGAGCAA
LOC_Os08g37104
OsAffx.17372.1.S1_x_at--1063--9451Chr08:23317171..23317226 (25 bp)
TCTGACAAGAGCGACAATCAACGTG
LOC_Os08g37104
OsAffx.17372.1.S1_x_at--40--8931Chr08:23317240..23317264 (25 bp)
TGAGCGCCATGACGATCGAGCACTT
LOC_Os08g37104
OsAffx.17372.1.S1_x_at--96--6391Chr08:23317253..23317277 (25 bp)
GATCGAGCACTTCATCCTAAGGCTG
LOC_Os08g37104
OsAffx.17372.1.S1_x_at--154--3011NONE
AATGCAAAGCATGTGAACCCGAAGG
NONE
OsAffx.17372.1.S1_x_at--632--6811Chr08:23318851..23318875 (25 bp)
GTTTTTGGACTGGACTGGCCTGAGC
LOC_Os08g37104
OsAffx.17372.1.S1_x_at--976--2171Chr08:23319695..23319719 (25 bp)
ACACGGCTTGCCACGTCGAGGAAGA
LOC_Os08g37104
OsAffx.17372.1.S1_x_at--382--7851Chr08:23319806..23319830 (25 bp)
GGTACCTTCTTGACTTCACCAAGGA
LOC_Os08g37104
OsAffx.17372.1.S1_x_at--540--2911Chr08:23319826..23319850 (25 bp)
AAGGACGTGAGCTCCCTCATGGACT
LOC_Os08g37104
OsAffx.17372.1.S1_x_at--905--4431Chr08:23319933..23319957 (25 bp)
GCCTATCCAGGTTGTGCCGTACGAG
LOC_Os08g37104
Target Sequence 
TCTCTAGATTCATTACGTGCAGCATATGCATCTGCAACTCGAGAGCAAAAGATAAAAGGGTGATATGGAGAAAATCTCTG
ACAAGAGCGACAATCAACGTGGGTGGGCGCGTGCTGAGCGCCATGACGATCGAGCACTTCATCCTAAGGCTGCCCTACAA
TGCAAAGCATGTGAACCCGAAGGGGGTGAAATCCGGCAATGGCGCGGCGGCGGCGGCGAGAGGGGTTTTTGGACTGGACT
GGCCTGAGCCGTCGGTGACATTCGCGCTGTCCTGCGGAAGCTGGTCTTCGCCGGCGGTGAGGGTGTACACGGCTTGCCAC
GTCGAGGAAGAGCTGGAGGCAGCCAAGAGGGACTACCTGCAGGCCGCCGTCGGCGTCTCGACGGCGACCAGCATCTCGAT
CCCCAAGCTCCTGCACTGGTACCTTCTTGACTTCACCAAGGACGTGAGCTCCCTCATGGACTGGGTGTGCCTGCAGCTGC
CCGGCGAGCGGCGGCGGCACGCCGTCGAGGCCGTCGAGGCCAGCCGCCGGAGCCCGTCGCCGCCGCCTATCCAGGTTGTG
CCGTACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17372.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis