Browse Element(s) Details


OsAffx.17384.1.S1_s_at

Description tigr:9636.m03794
TID=OsAffx.17384.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable RING zinc finger protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3776011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37730Os.55174.1.S1_at11/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37730Os.16502.1.S1_at1/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37740NANA8+23769952..23773292retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g37750OsAffx.17383.1.S1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37750Os.19280.1.A1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37760Os.17554.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_s_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37770NANA8+23792703..23792963hypothetical protein
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17384.1.S1_s_at--52--4151Chr08:23789308..23789332 (25 bp)
CGCTGATGCGCACGTTCTCGGCCAG
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--543--4471Chr08:23789418..23789442 (25 bp)
GCCTCCGTGGAGCAACACTGCGACG
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--920--10851Chr08:23789473..23789497 (25 bp)
TTGGTGACCATGTATGATGACGTGT
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--562--751Chr08:23789482..23789506 (25 bp)
ATGTATGATGACGTGTCCCGCTGAT
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--667--1911Chr08:23789492..23789516 (25 bp)
ACGTGTCCCGCTGATTGTTAGTCAA
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--474--8711Chr08:23789495..23789519 (25 bp)
TGTCCCGCTGATTGTTAGTCAAAGT
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--63--7091Chr08:23789512..23789536 (25 bp)
GTCAAAGTATTAGAAGTACTCCACT
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--954--5331Chr08:23789524..23789548 (25 bp)
GAAGTACTCCACTAATATTAGGAAG
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--472--11Chr08:23789540..23789564 (25 bp)
ATTAGGAAGGCGTCCTTGTCGTCAC
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--266--10811Chr08:23789555..23789579 (25 bp)
TTGTCGTCACCGTTAATTCTCTTCT
LOC_Os08g37760
OsAffx.17384.1.S1_s_at--148--10491Chr08:23789567..23789591 (25 bp)
TTAATTCTCTTCTCTTTTCGGCGGC
LOC_Os08g37760
Target Sequence 
CGCTGATGCGCACGTTCTCGGCCAGGCTGCCGGCGTGGGGCTCCGCTCGACGCGGCGCCGAAGCCGACTCTCCGGGGAAG
GACGGCGCCAAGGTCGCCGGCGACTGCACCGCCTCCGTGGAGCAACACTGCGACGGCGGCGGCGGCGGCGCGTGCCCACG
TCCACTTGGTGACCATGTATGATGACGTGTCCCGCTGATTGTTAGTCAAAGTATTAGAAGTACTCCACTAATATTAGGAA
GGCGTCCTTGTCGTCACCGTTAATTCTCTTCTCTTTTCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17384.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis