Browse Element(s) Details


OsAffx.17415.1.S1_at

Description tigr:9636.m03971
TID=OsAffx.17415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3932011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39270Os.54871.1.S1_at10/118+24685538..24687609Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
LOC_Os08g39280OsAffx.6082.1.S1_at10/118+24690318..24693387hypothetical protein
LOC_Os08g39290Os.55246.1.S1_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39290Os.55246.1.S1_x_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein
LOC_Os08g39330Os.6423.1.S1_at11/118+24721442..24722816expressed protein
LOC_Os08g39330Os.26088.1.A1_x_at7/118+24721442..24722816expressed protein
LOC_Os08g39330Os.15871.1.A1_at2/118+24721442..24722816expressed protein
LOC_Os08g39340OsAffx.29598.1.S1_at11/118+24728294..24731473expressed protein
LOC_Os08g39350Os.9696.1.S1_at11/118+24733098..24739315Glycerophosphoryl diester phosphodiesterase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17415.1.S1_at--1013--8371Chr08:24711184..24711208 (25 bp)
GGCGAGTGCGCGTGAATTCCCTGTT
LOC_Os08g39320
OsAffx.17415.1.S1_at--602--6111Chr08:24711047..24711071 (25 bp)
GAGTGCCTCTACTTCTTCGGTAGAA
LOC_Os08g39320
OsAffx.17415.1.S1_at--705--10011Chr08:24711027..24711051 (25 bp)
TAGAATCTCCTCCATTGACGTTTCA
LOC_Os08g39320
OsAffx.17415.1.S1_at--367--1491Chr08:24710297..24710317 (21 bp)
AGCAAGAACATGTTTCTGCTCCTCC
LOC_Os08g39320
OsAffx.17415.1.S1_at--470--9091Chr08:24710281..24710305 (25 bp)
TGCTCCTCCACGCAATGATGCTTAG
LOC_Os08g39320
OsAffx.17415.1.S1_at--1027--8851Chr08:24710266..24710290 (25 bp)
TGATGCTTAGGCACCACGTATCGTT
LOC_Os08g39320
OsAffx.17415.1.S1_at--893--10151Chr08:24710248..24710272 (25 bp)
TATCGTTCGTGCTCAAGCCGACTGA
LOC_Os08g39320
OsAffx.17415.1.S1_at--224--5291Chr08:24710219..24710243 (25 bp)
GAAGGCTTCGACCTAGGCGTCAAAT
LOC_Os08g39320
OsAffx.17415.1.S1_at--955--851Chr08:24710102..24710229 (25 bp)
AGGCGTCAAATGGTCTCTAGAATGG
LOC_Os08g39320
OsAffx.17415.1.S1_at--664--2731Chr08:24710071..24710095 (25 bp)
AAGAAGCTGCCTTGGGACCTAGACT
LOC_Os08g39320
OsAffx.17415.1.S1_at--904--10831Chr08:24710060..24710084 (25 bp)
TTGGGACCTAGACTGCAACATCACC
LOC_Os08g39320
Target Sequence 
GGCGAGTGCGCGTGAATTCCCTGTTCGGCGACGGCGGCGGCGGAGATGACGGGTTCCGGGCGGTGAGGAGGCTGGTGAAG
CTCAACTCCGCCGTGCAGAACAGGAGCGTCAGGGAGTTGCTCGAGCTCGCCGGCGACGAGTGCCTCTACTTCTTCGGTAG
AATCTCCTCCATTGACGTTTCACAAGTGAGCAAGAACATGTTTCTGCTCCTCCACGCAATGATGCTTAGGCACCACGTAT
CGTTCGTGCTCAAGCCGACTGAAAACGAAGGCTTCGACCTAGGCGTCAAATGGTCTCTAGAATGGAAGGGCAAGAAGCTG
CCTTGGGACCTAGACTGCAACATCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis