Browse Element(s) Details


OsAffx.17472.1.S1_at

Description tigr:9636.m04292
TID=OsAffx.17472.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Auxin responsive protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4219811/11Auxin responsive protein, expressed
LOC_Os02g203205/11Auxin responsive protein
LOC_Os08g422775/11Auxin responsive protein
LOC_Os03g600901/11Methylenetetrahydrofolate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42140NANA8+26493420..26499236retrotransposon protein, putative, unclassified
LOC_Os08g42150NANA8+26507630..26508224hypothetical protein
LOC_Os08g42160NANA8+26508920..26512903retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42170NANA8+26513991..26514314Zinc transporter 2 precursor, putative
LOC_Os08g42180NANA8+26515000..26515683hypothetical protein
LOC_Os08g42189Os.8731.2.S1_s_at11/118+26519312..26522945HEAT repeat family protein, expressed
LOC_Os08g42198OsAffx.17472.1.S1_at11/118+26523376..26523997Auxin responsive protein, expressed
LOC_Os08g42210OsAffx.17471.1.S1_at11/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210OsAffx.17471.3.S1_s_at9/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210Os.52313.1.S1_x_at7/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210OsAffx.17471.2.S1_at7/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210Os.52313.1.S1_at4/118+26524273..26531101cation exchanger, putative
LOC_Os08g42220OsAffx.12130.1.S1_at11/118+26532138..26535329hypothetical protein
LOC_Os08g42230Os.10827.1.S1_x_at11/118+26535995..26539282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42230Os.46055.2.S1_x_at6/118+26535995..26539282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42240NANA8+26539843..26540422hypothetical protein
LOC_Os08g42250OsAffx.25936.1.S1_s_at11/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.7.S1_s_at11/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.1.S1_at7/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.2.S1_x_at4/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.5.S1_x_at3/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006555biological_processmethionine metabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0004489molecular_functionmethylenetetrahydrofolate reductase (NADPH) activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17472.1.S1_at--1046--2634Chr01:22925714..22925733 (20 bp)
AACCATCTTATCTCAGTTTGATCTG
NONE
OsAffx.17472.1.S1_at--113--1213Chr08:26562248..26562272 (25 bp)
AGTTTGATCTGATGTCACTTAAGGA
NONE
OsAffx.17472.1.S1_at--919--6993Chr08:26562235..26562259 (25 bp)
GTCACTTAAGGACAAGGCCATAGCA
NONE
OsAffx.17472.1.S1_at--1113--8433Chr08:26562220..26562244 (25 bp)
GGCCATAGCAATTAGCAACACTTGA
NONE
OsAffx.17472.1.S1_at--32--9753Chr08:26562186..26562210 (25 bp)
TAATACAACCCAACCTTCACTAAGT
NONE
OsAffx.17472.1.S1_at--374--3694Chr08:26562127..26562151 (25 bp)
CTTTGGTTAATTTGCTGTTGTGTTG
NONE
OsAffx.17472.1.S1_at--295--9013Chr08:26562062..26562086 (25 bp)
TGAAGGCCCTGCTGGACAGGTGTTT
LOC_Os08g42277
OsAffx.17472.1.S1_at--306--2133Chr08:26562047..26562071 (25 bp)
ACAGGTGTTTGTCCAAGCACAGGAA
LOC_Os08g42277
OsAffx.17472.1.S1_at--222--8893Chr08:26561930..26561954 (25 bp)
TGAGGACGGAGTGCGTGAACCACCC
LOC_Os08g42277
OsAffx.17472.1.S1_at--1038--7333Chr08:26561916..26561940 (25 bp)
GTGAACCACCCGCTGTTCAGGGCGC
LOC_Os08g42277
OsAffx.17472.1.S1_at--406--4713Chr08:26561727..26561751 (25 bp)
GCGGCGCACCTCATGCTGGTTGCTC
LOC_Os08g42277
Target Sequence 
AACCATCTTATCTCAGTTTGATCTGATGTCACTTAAGGACAAGGCCATAGCAATTAGCAACACTTGATCAGCTAATTAAT
ACAACCCAACCTTCACTAAGTTGTAAATTAGATAGGATAGTTGTGTTCAGATAAGCTTTGGTTAATTTGCTGTTGTGTTG
ATGAAGGAGAGAGGTGTGAGGAACAAGCAGGGAGTGATCATGAAGGCCCTGCTGGACAGGTGTTTGTCCAAGCACAGGAA
TGGTGGCNGGCCGGAGCCGCCGGAGGGGAGCTTCGCGGTGTACGTCGGCGGCGGCGGCGGCGGCGGAGGGGCGGCGAGGG
AGAGGTTCGTGGTGAGGACGGAGTGCGTGAACCACCCGCTGTTCAGGGCGCTGCTGGAGGAGGCCGAGGAGGAGTACGGG
TACGTGGCGGACGGCCCGCTCGAGCTCCCCTGCGACGCCGGCGAGTTCGTCGCCGTCCTGGCGAGGATCGAGCGTGAGAT
GGCCGAGGAGAGGACGGTCGGGTGCGCCGGCGGCCTGGTGTTCAGGCTGCACCCGGCGGCGCACCTCATGCTGGTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis