Browse Element(s) Details


OsAffx.17496.1.S1_at

Description tigr:9636.m04426
TID=OsAffx.17496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4346011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43430Os.54593.1.S1_at11/118+27340904..27342199pepper esterase, putative, expressed
LOC_Os08g43440Os.5369.1.S1_at11/118+27346219..27348261Cytochrome P450 family protein, expressed
LOC_Os08g43450Os.52913.1.A1_at11/118+27353542..27355955MYB-like protein 2, putative, expressed
LOC_Os08g43460OsAffx.17496.1.S1_at11/118+27359553..27361658hypothetical protein
LOC_Os08g43470Os.5563.1.S1_at11/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43470OsAffx.30150.5.S1_s_at1/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43480Os.7377.1.S1_at11/118+27369446..27372129Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed
LOC_Os08g43500Os.53131.1.S1_at11/118+27378353..27380711Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17496.1.S1_at--1140--10751Chr08:27360276..27360297 (22 bp)
TTGACGAGGGCGCAACACAACACAT
LOC_Os08g43460
OsAffx.17496.1.S1_at--681--7131Chr08:27361194..27361218 (25 bp)
GTCATCATTGTATCCTCCTTTTGCG
LOC_Os08g43460
OsAffx.17496.1.S1_at--516--6291Chr08:27361245..27361269 (25 bp)
GATGTTGGCGATGGCCACTTCTCGA
LOC_Os08g43460
OsAffx.17496.1.S1_at--381--5471Chr08:27361285..27361309 (25 bp)
GAACTAAGAATGACAGCCTCTGCAT
LOC_Os08g43460
OsAffx.17496.1.S1_at--240--9191Chr08:27361336..27361360 (25 bp)
TGCCGGTGGTCATCTCAACAGGTAT
LOC_Os08g43460
OsAffx.17496.1.S1_at--474--6871Chr08:27361357..27361381 (25 bp)
GTATTGTCAACACTTACCGGACGCG
LOC_Os08g43460
OsAffx.17496.1.S1_at--353--7111Chr08:27361425..27361449 (25 bp)
GTCACCTCCGAATCCGATGTAGCAA
LOC_Os08g43460
OsAffx.17496.1.S1_at--582--2651Chr08:27361479..27361503 (25 bp)
AAGCCACCTCAGTTAGCGGGAGAGT
LOC_Os08g43460
OsAffx.17496.1.S1_at--26--1171Chr08:27361501..27361525 (25 bp)
AGTCAAACCGCTTGTGCACGACAAA
LOC_Os08g43460
OsAffx.17496.1.S1_at--176--5171Chr08:27361556..27361580 (25 bp)
GAAGGACATGGTATCGGCGGTTTTA
LOC_Os08g43460
OsAffx.17496.1.S1_at--528--4671Chr08:27361572..27361596 (25 bp)
GCGGTTTTAACCTCGATAATCACAG
LOC_Os08g43460
Target Sequence 
TTGACGAGGGCGCAACACAACACATCTTGTTCTCCTTCCTTGTCTGCTCCACCGTCATCATTGTATCCTCCTTTTGCGCC
TCGGTAGCGCTCGTCACCGCCGTCGATGTTGGCGATGGCCACTTCTCGACCATTACCTCGCCAAGAACTAAGAATGACAG
CCTCTGCATCGCCAGCGCAGACGCGCCCTTCTCCCTGCCGGTGGTCATCTCAACAGGTATTGTCAACACTTACCGGACGC
GCACCACTACCGTATCGCCTCACACCGGGATGGCGCTCCTCATCGTCACCTCCGAATCCGATGTAGCAACCGCGGTGGGG
GTCGACATCATCGGCGCCAAGCCACCTCAGTTAGCGGGAGAGTCAAACCGCTTGTGCACGACAAAGTCACCCAACAATGG
CTTGAGGATGAGCGAGAAGGACATGGTATCGGCGGTTTTAACCTCGATAATCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis