Browse Element(s) Details


OsAffx.17546.1.S1_at

Description tigr:9637.m00122
TID=OsAffx.17546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0279011/11zinc-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02770Os.51029.1.S1_at11/119+1254785..1256020expressed protein
LOC_Os09g02780OsAffx.6153.1.S1_at11/119+1271405..1271941SRF-type transcription factor family protein
LOC_Os09g02790OsAffx.17546.1.S1_at11/119+1277420..1281979zinc-binding protein, putative, expressed
LOC_Os09g02800OsAffx.6154.1.S1_at11/119+1284630..1285442hypothetical protein
LOC_Os09g02810Os.15542.1.S1_at11/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_at2/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_x_at1/119+1297966..1311555CBF/Mak21 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17546.1.S1_at--367--1011Chr09:1277921..1277945 (25 bp)
AGGTAGTGCACCTAAGGCCCATAAA
LOC_Os09g02790
OsAffx.17546.1.S1_at--726--2351Chr09:1277874..1277898 (25 bp)
AAAGCTGGAACACCTCATTGCACGA
LOC_Os09g02790
OsAffx.17546.1.S1_at--78--6071Chr09:1277851..1277875 (25 bp)
GAGTTGCCACTGCTGGCTACACAAT
LOC_Os09g02790
OsAffx.17546.1.S1_at--3--3671Chr09:1277818..1277841 (24 bp)
CTTACCTGTTCACTTAGCTGCAAGA
LOC_Os09g02790
OsAffx.17546.1.S1_at--536--5531Chr09:1277564..1277588 (25 bp)
GAAAAAGGCAGGCATATCCTCAGAT
LOC_Os09g02790
OsAffx.17546.1.S1_at--973--251Chr09:1277551..1277575 (25 bp)
ATATCCTCAGATGACTTCTCAGGGC
LOC_Os09g02790
OsAffx.17546.1.S1_at--939--9631Chr09:1277533..1277557 (25 bp)
TCAGGGCCTGAAGCTTCAACTCGAG
LOC_Os09g02790
OsAffx.17546.1.S1_at--661--9671Chr09:1277518..1277542 (25 bp)
TCAACTCGAGTTTCTCGTTCACGAA
LOC_Os09g02790
OsAffx.17546.1.S1_at--175--3791Chr09:1277505..1277529 (25 bp)
CTCGTTCACGAAATCATGCATCAAA
LOC_Os09g02790
OsAffx.17546.1.S1_at--332--1971Chr09:1277468..1277492 (25 bp)
ACATCCAACCAATACGAAGCTGCGT
LOC_Os09g02790
OsAffx.17546.1.S1_at--330--5411Chr09:1277453..1277477 (25 bp)
GAAGCTGCGTAAAAAGCCTCGCAAG
LOC_Os09g02790
Target Sequence 
AGGTAGTGCACCTAAGGCCCATAAAGAGGTCAGAACATCATAGACCTAAAGCTGGAACACCTCATTGCACGAGTTGCCAC
TGCTGGCTACACAATGCACCCAGCCTTACCTGTTCACTTAGCTGCAAGAAAAAGGCAGGCATATCCTCAGATGACTTCTC
AGGGCCTGAAGCTTCAACTCGAGTTTCTCGTTCACGAAATCATGCATCAAATGTCAATCAGAAACATCCAACCAATACGA
AGCTGCGTAAAAAGCCTCGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis