Browse Element(s) Details


OsAffx.17579.1.S1_at

Description tigr:9637.m00416
TID=OsAffx.17579.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0662011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06550NANA9+3113277..3114272retrotransposon protein, putative, unclassified
LOC_Os09g06560Os.53771.1.A2_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06560Os.53771.1.A1_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06570Os.50216.1.S1_at11/119+3125678..3126160expressed protein
LOC_Os09g06580OsAffx.24386.2.S1_at11/119+3128207..3129193expressed protein
LOC_Os09g06590OsAffx.29734.1.S1_at11/119+3130087..3131619hypothetical protein
LOC_Os09g06600NANA9+3132719..3135097retrotransposon protein, putative, unclassified
LOC_Os09g06610NANA9+3135411..3136990retrotransposon protein, putative, unclassified
LOC_Os09g06620OsAffx.17579.1.S1_at11/119+3138079..3139353F-box domain containing protein, expressed
LOC_Os09g06634Os.10321.1.S1_at11/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06634OsAffx.27865.1.S1_x_at2/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06650Os.56292.1.S1_x_at2/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650Os.56292.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.30013.5.S1_x_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06650OsAffx.15648.1.S1_at1/119+3157223..3162276Transposable element protein, putative, Retrotrans_gag
LOC_Os09g06660OsAffx.6187.1.S1_at11/119+3162690..3163915hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17579.1.S1_at--455--7931Chr09:3138765..3138789 (25 bp)
GGATTTGTGTTACCGCTTCACCGAC
LOC_Os09g06620
OsAffx.17579.1.S1_at--819--9111Chr09:3138866..3138890 (25 bp)
TGCTGCTCGATGTGGGCACCATGAA
LOC_Os09g06620
OsAffx.17579.1.S1_at--889--3171Chr09:3138889..3138913 (25 bp)
AATTGGACAGTCATCGTGGCGCCGT
LOC_Os09g06620
OsAffx.17579.1.S1_at--721--7651Chr09:3138923..3138947 (25 bp)
GGGAGTCGTACTGCGTCGCTGACAT
LOC_Os09g06620
OsAffx.17579.1.S1_at--57--3831Chr09:3138966..3138990 (25 bp)
CTGCCTCGTGTCCAGCCAGGAGCAA
LOC_Os09g06620
OsAffx.17579.1.S1_at--616--8051Chr09:3139056..3139080 (25 bp)
GGAGATCTCATTGTTGCATCAGTTT
LOC_Os09g06620
OsAffx.17579.1.S1_at--1003--7251Chr09:3139201..3139225 (25 bp)
GTCCTCAATCTCAGCACCATGAAGC
LOC_Os09g06620
OsAffx.17579.1.S1_at--112--3531Chr09:3139218..3139242 (25 bp)
CATGAAGCTGGAGATGTTTCGCAAC
LOC_Os09g06620
OsAffx.17579.1.S1_at--1119--6271Chr09:3139230..3139254 (25 bp)
GATGTTTCGCAACGGTTCGGATGAA
LOC_Os09g06620
OsAffx.17579.1.S1_at--647--6671Chr09:3139284..3139308 (25 bp)
GTTGCGTTTGGCACCTCTGACGACA
LOC_Os09g06620
OsAffx.17579.1.S1_at--938--9471Chr09:3139299..3139323 (25 bp)
TCTGACGACACCTAGCTGGGATGAT
LOC_Os09g06620
Target Sequence 
GGATTTGTGTTACCGCTTCACCGACCGCGACGGCATGTCCGCCGGCCGGTTCGTGTACTGGCGGTCGAACACCAAGAACA
ACAAGAACGTGGAGAGGATCTTGCTGCTCGATGTGGGCACCATGAATTGGACAGTCATCGTGGCGCCGTTTCAGGTAGGG
GAGTCGTACTGCGTCGCTGACATGGCGGAGCACGGTGGGCTCTGCCTCGTGTCCAGCCAGGAGCAAAACCTTCAGCTCTG
GGTCCGCAGCAGCGGCAGCGGCACCATCAATGGTGGATGGCTGCTTAAGAAGGAGATCTCATTGTTGCATCAGTTTGGGT
ACTTGAAGAAGCTGCGGAGTGAGGAGTGGATGAAGAGGGTGCGTGTGCTGGCAGCAAAGGCTGGCTATGTCTACATGGAG
TTCTGGTCCATCAGGAAATCTAATTCCTATCTTCTCGTCCTCAATCTCAGCACCATGAAGCTGGAGATGTTTCGCAACGG
TTCGGATGAACCTTTCAGGGGTCCTGCATTTCCATTCTTGTTGCGTTTGGCACCTCTGACGACACCTAGCTGGGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis