Browse Element(s) Details


OsAffx.17600.1.S1_at

Description tigr:9637.m00584
TID=OsAffx.17600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0814011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08120OsAffx.29757.2.S1_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.2.S1_x_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_x_at8/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.1.S1_x_at7/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.4.S1_x_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.2.S1_x_at11/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08130Os.50903.1.S1_at10/119+4200075..4203423Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os09g08140OsAffx.17600.1.S1_at11/119+4211385..4211687hypothetical protein
LOC_Os09g08150OsAffx.29759.1.S1_at11/119+4224923..4225420hypothetical protein
LOC_Os09g08160Os.15391.1.S1_at11/119+4226927..4228757expressed protein
LOC_Os09g08170OsAffx.22927.1.S1_x_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08170OsAffx.22894.1.S1_at1/119+4232040..4234194transposon protein, putative, unclassified
LOC_Os09g08180OsAffx.20729.1.S1_x_at4/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.3.S1_x_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_at3/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180Os.56292.1.S1_x_at2/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08180OsAffx.21171.4.S1_x_at1/119+4234943..4244725retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17600.1.S1_at--402--531Chr09:4211420..4211444 (25 bp)
ATCGCTGAGTTGCTGCCCTCTCGCT
LOC_Os09g08140
OsAffx.17600.1.S1_at--742--3771Chr09:4211437..4211461 (25 bp)
CTCTCGCTGCTGAGTACTATGTCTA
LOC_Os09g08140
OsAffx.17600.1.S1_at--357--6091Chr09:4211448..4211502 (25 bp)
GAGTACTATGTCTACCAGAATCTGG
LOC_Os09g08140
OsAffx.17600.1.S1_at--981--7111Chr09:4211457..4211511 (25 bp)
GTCTACCAGAATCTGGAGCTACGGG
LOC_Os09g08140
OsAffx.17600.1.S1_at--503--1731Chr09:4211529..4211553 (25 bp)
ACCATCGTCAAATCCAGCAGCCAAT
LOC_Os09g08140
OsAffx.17600.1.S1_at--549--1511Chr09:4211544..4211568 (25 bp)
AGCAGCCAATGGACGTCTACTGTCA
LOC_Os09g08140
OsAffx.17600.1.S1_at--931--831Chr09:4211552..4211576 (25 bp)
ATGGACGTCTACTGTCATCATCGGG
LOC_Os09g08140
OsAffx.17600.1.S1_at--1012--9531Chr09:4211559..4211583 (25 bp)
TCTACTGTCATCATCGGGTCCCGAT
LOC_Os09g08140
OsAffx.17600.1.S1_at--121--9931Chr09:4211603..4211627 (25 bp)
TACTGATCACCCGATGGCTAGGAAG
LOC_Os09g08140
OsAffx.17600.1.S1_at--337--9671Chr09:4211609..4211633 (25 bp)
TCACCCGATGGCTAGGAAGGTTGGT
LOC_Os09g08140
OsAffx.17600.1.S1_at--946--10051Chr09:4211633..4211657 (25 bp)
TAGGAAGGTGCATGAGGTCAGCAAT
LOC_Os09g08140
Target Sequence 
ATCGCTGAGTTGCTGCCCTCTCGCTGCTGAGTACTATGTCTACCAGAATCTGGAGCTACGGGGCTCGCTCGCCTCTTCCA
CCATCGTCAAATCCAGCAGCCAATGGACGTCTACTGTCATCATCGGGTCCCGATCATCCCACCACTCCTCCACTACTGAT
CACCCGATGGCTAGGAAGGTTGGTAGGAAGGTGCATGAGGTCAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis