Browse Element(s) Details


OsAffx.17611.1.S1_at

Description tigr:9637.m00674
TID=OsAffx.17611.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cinnamoyl-CoA reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0923011/11cinnamoyl CoA reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09200Os.53142.1.S1_at2/119+4921538..4922698transposon protein, putative, unclassified
LOC_Os09g09200Os.46314.2.S1_x_at1/119+4921538..4922698transposon protein, putative, unclassified
LOC_Os09g09210OsAffx.29773.1.S1_s_at11/119+4928367..4931323expressed protein
LOC_Os09g09210OsAffx.29773.1.S1_at11/119+4928367..4931323expressed protein
LOC_Os09g09220OsAffx.17610.1.S1_at11/119+4932507..4941200Protein kinase domain containing protein, expressed
LOC_Os09g09230OsAffx.17611.1.S1_at11/119+4942208..4942863cinnamoyl CoA reductase, putative
LOC_Os09g09240NANA9+4948220..4954135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09250OsAffx.21897.5.S1_x_at4/119+4954357..4957281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09260OsAffx.29774.1.S1_at11/119+4960788..4961434hypothetical protein
LOC_Os09g09270OsAffx.29775.1.S1_at10/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09270OsAffx.29033.1.S1_at1/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09279Os.54774.1.S1_x_at2/119+4965329..4966709NA
LOC_Os09g09279Os.54774.1.S1_at2/119+4965329..4966709NA

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17611.1.S1_at--670--7951Chr09:4942796..4942820 (25 bp)
GGATACACCTGCTAGTCATTGTTCC
LOC_Os09g09230
OsAffx.17611.1.S1_at--1032--7131Chr09:4942782..4942806 (25 bp)
GTCATTGTTCCTCCGGTGACAACAG
LOC_Os09g09230
OsAffx.17611.1.S1_at--508--2331Chr09:4942689..4942713 (25 bp)
AAAGATTACCCGAACGCTGTTGCAG
LOC_Os09g09230
OsAffx.17611.1.S1_at--274--4731Chr09:4942674..4942698 (25 bp)
GCTGTTGCAGCATACGTTGATGTGC
LOC_Os09g09230
OsAffx.17611.1.S1_at--514--7651Chr09:4942649..4942673 (25 bp)
GGGATGTAGCGCGTGCACATGCACT
LOC_Os09g09230
OsAffx.17611.1.S1_at--1037--5751Chr09:4942598..4942622 (25 bp)
GACGTTATCTTTGTGTTGGTGCCGT
LOC_Os09g09230
OsAffx.17611.1.S1_at--343--7291Chr09:4942371..4942604 (25 bp)
GTGCCGTGCTTCACCGGTGTGATAA
LOC_Os09g09230
OsAffx.17611.1.S1_at--894--6071Chr09:4942343..4942367 (25 bp)
GAGTAGACCGTTGATCAAACCTTAC
LOC_Os09g09230
OsAffx.17611.1.S1_at--1089--2291Chr09:4942305..4942329 (25 bp)
AAAGGCTGAGAGACCTTGGCCTCGA
LOC_Os09g09230
OsAffx.17611.1.S1_at--379--3791Chr09:4942285..4942309 (25 bp)
CTCGAGTTCACTCCCATAAAAGAAA
LOC_Os09g09230
OsAffx.17611.1.S1_at--958--5551Chr09:4942264..4942288 (25 bp)
GAAAGCCTCTACAATATGATCTTAA
LOC_Os09g09230
Target Sequence 
GGATACACCTGCTAGTCATTGTTCCTCCGGTGACAACAGGCCAGATGTTGCAACCAACAACAAACCTGAGCTCCCACCAT
TTCATCCATTACCTGAATGGAACCAAGAAAGATTACCCGAACGCTGTTGCAGCATACGTTGATGTGCGGGATGTAGCGCG
TGCACATGCACTGGTGTATGAGAACCCAGAAGCGAATGGACGTTATCTTTGTGTTGGTGCCGTGCTTCACCGGTGTGATA
ATAAGAGTAGACCGTTGATCAAACCTTACAAGTTCTCGAACAAAAGGCTGAGAGACCTTGGCCTCGAGTTCACTCCCATA
AAAGAAAGCCTCTACAATATGATCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis